#include <svkDcmHeader.h>

Inheritance diagram for svkDcmHeader:

Public Types
enum	DcmIodType { MR_IMAGE = 0, ENHANCED_MR_IMAGE, MR_SPECTROSCOPY, SECONDARY_CAPTURE, MULTI_FRAME_BYTE_SC, MULTI_FRAME_WORD_SC, RAW_DATA }

enum	{ DCMTK_API = 0 }

enum	DcmPixelDataFormat { UNDEFINED = -1, UNSIGNED_INT_1 = 0, UNSIGNED_INT_2, SIGNED_INT_2, SIGNED_FLOAT_4, SIGNED_FLOAT_8 }

enum	Orientation { UNKNOWN_ORIENTATION = -1, AXIAL = 0, CORONAL, SAGITTAL }

enum	DcmDataOrderingDirection { SLICE_ORDER_UNDEFINED = -1, INCREMENT_ALONG_POS_NORMAL = 0, INCREMENT_ALONG_NEG_NORMAL = 1 }

enum	PHIType { PHI_IDENTIFIED = 0, PHI_LIMITED, PHI_DEIDENTIFIED }

enum	DimensionIndexLabel { COL_INDEX = -2, ROW_INDEX = -1, SLICE_INDEX = 0, TIME_INDEX = 1, CHANNEL_INDEX = 2, EPSI_ACQ_INDEX = 3 }

typedef vector< map < svkDcmHeader::DimensionIndexLabel, int > >	DimensionVector

Public Member Functions
	vtkTypeMacro (svkDcmHeader, vtkObject)

virtual void	CreateIOD (DcmIodType iodType)=0

virtual void	SetSOPClassUID (DcmIodType iodType)=0

virtual void	PrintDcmHeader ()=0

virtual void	PrintDcmHeader (ostream &os)=0

virtual void	InsertEmptyElement (const char *name)=0

virtual void	InsertUniqueUID (const char *name)=0

virtual string	GenerateUniqueUID ()=0

virtual void	SetValue (const char *name, int value)=0

virtual void	SetValue (const char *name, float value)=0

virtual void	SetValue (const char *name, double value)=0

virtual void	SetValue (const char *name, string value, bool setMetaInfo=false)=0

virtual void	SetValue (const char name, unsigned char values, int numValues)=0

virtual void	SetValue (const char name, unsigned short values, int numValues)=0

virtual void	SetValue (const char name, signed short values, int numValues)=0

virtual void	SetValue (const char name, float values, int numValues)=0

virtual void	ModifyValueRecursive (const char *name, string value)=0

virtual void	GetByteValue (const char name, char values, long unsigned int numValues)=0

virtual void	GetShortValue (const char name, short values, long unsigned int numValues)=0

virtual unsigned short	GetShortValue (const char *name, long unsigned int position)=0

virtual unsigned short	GetPixelValue (long unsigned int position)=0

virtual int	GetIntValue (const char *name)=0

virtual float	GetFloatValue (const char *name)=0

virtual void	GetFloatValue (const char name, float values, long unsigned int numValues)=0

virtual double	GetDoubleValue (const char *name)=0

virtual string	GetStringValue (const char *name)=0

virtual string	GetStringValue (const char *name, int pos)=0

virtual void	AddSequenceItemElement (const char parentSeqName, int parentSeqItemPosition, const char elementName)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, string value, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, char values, int numValues, const char parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, unsigned short values, int numValues, const char parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, unsigned int values, int numValues, const char parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, float values, unsigned long int numValues, const char parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, int value, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, long int value, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, float value, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	AddSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, double value, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual void	CopySequence (svkDcmHeader target, const char seqName)=0

virtual void	ClearSequence (const char *parentSeqName)=0

virtual void	ClearElement (const char *elementName)=0

virtual void	RemoveElement (const char *elementName)=0

virtual int	GetIntSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, const char *parentSeqName=NULL, int parentSeqItemPosition=0, int pos=0)=0

virtual long int	GetLongIntSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, const char *parentSeqName=NULL, int parentSeqItemPosition=0, int pos=0)=0

virtual float	GetFloatSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, const char *parentSeqName=NULL, int parentSeqItemPosition=0, int pos=0)=0

virtual void	GetFloatSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, float values, int numValues, const char parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual double	GetDoubleSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual string	GetStringSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual string	GetStringSequenceItemElement (const char seqName, int seqItemPosition, const char elementName, int pos, const char *parentSeqName=NULL, int parentSeqItemPosition=0)=0

virtual int	GetNumberOfElements (const char *elementName)=0

virtual int	GetNumberOfItemsInSequence (const char *seqName)=0

virtual int	GetNumberOfItemsInSequence (const char seqName, const char parentSeqName, int parentSeqItemPosition)=0

virtual void	WriteDcmFile (string fileName)=0

virtual void	WriteDcmFileCompressed (string fileName)=0

virtual int	ReadDcmFile (string fileName, unsigned int max_length=0)=0

virtual int	ReadDcmFileHeaderOnly (string fileName)=0

virtual int	GetOriginalXFerSyntax ()=0

virtual void	CopyDcmHeader (svkDcmHeader *headerCopy)=0

void	MakeDerivedDcmHeader (svkDcmHeader *headerCopy, string seriesDescription)

void	MakeDerivedDcmHeader (string seriesDescription="")

virtual bool	ElementExists (const char elementName, const char parentSeqName=NULL)=0

virtual void	ReplaceOldElements (bool replaceElements)=0

string	GetDcmPatientName (string PatientName)

void	SetDcmPatientName (string PatientName)

void	SetPixelDataType (DcmPixelDataFormat dataType)

int	GetPixelDataType (int vtkDataType=svkDcmHeader::UNDEFINED)

int	GetOrigin (double origin[3], int frameNumber=0)

void	GetPixelSpacing (double spacing[3])

void	GetPixelSize (double size[3])

void	GetOrientation (double orientation[2][3])

Orientation	GetOrientationType ()

int	GetOrientationIndex (svkDcmHeader::Orientation orientation)

void	GetNormalVector (double normal[3])

void	GetDataDcos (double dcos[3][3], DcmDataOrderingDirection dataSliceOrder=SLICE_ORDER_UNDEFINED)

void	SetSliceOrder (DcmDataOrderingDirection sliceOrderVal)

int	GetNumberOfCoils ()

int	GetNumberOfSlices ()

int	GetNumberOfTimePoints ()

int	GetSliceForFrame (int frame)

void	UpdateNumTimePoints ()

void	UpdateNumCoils ()

int	GetDimensionIndexPosition (string indexLabel)

string	GetDimensionIndexLabel (int dimensionIndexNumber)

void	AddDimensionIndex (svkDcmHeader::DimensionVector *dimensionVector, svkDcmHeader::DimensionIndexLabel indexType, int maxIndex=0)

void	RemoveDimensionIndex (svkDcmHeader::DimensionIndexLabel indexType)

void	SetDimensionIndexSize (svkDcmHeader::DimensionIndexLabel indexType, int maxIndex)

virtual int	GetSequenceItemElementLength (const char seqName, int seqItemPosition, const char elementName, const char *parentSeqName, int parentSeqItemPosition)=0

DimensionVector	GetDimensionIndexVector ()

int	GetNumberOfFramesInDimension (int dimensionIndex)

int	GetNumberOfFrames (svkDcmHeader::DimensionVector *dimensionVector)

void	InitPatientModule (string PatientName, string patientID, string PatientBirthDate, string PatientSex)

void	InitGeneralStudyModule (string studyDate, string studyTime, string referringPhysiciansName, string studyID, string accessionNumber, string studyInstanceUID)

void	InitGeneralSeriesModule (string seriesNumber, string seriesDescription, string patientPosition)

void	InitImagePixelModule (int rows, int columns, svkDcmHeader::DcmPixelDataFormat dataType)

void	InitImagePlaneModule (string imagePositionPatient, string pixelSpacing="", string imageOrientationPatient="", string sliceThickness="")

void	InitMRImageModule (string repetitionTime, string echoTime)

void	InitPlaneOrientationMacro (double dcos[3][3])

void	InitPlaneOrientationMacro (string orientationString)

void	InitPixelMeasuresMacro (string pixelSizes, string sliceThickness)

void	InitMultiFrameDimensionModule (svkDcmHeader::DimensionVector *dimensionVector)

void	InitPerFrameFunctionalGroupSequence (double toplc[3], double voxelSpacing[3], double dcos[3][3], svkDcmHeader::DimensionVector *dimensionVector)

void	InitVOILUTModule (float center, float width)

void	InitPixelValueTransformationMacro (double slope=1.00000, double intercept=0.00000)

void	InitMRImagingModifierMacro (float transmitFreq, float pixelBandwidth, string magTransfer="NONE", string bloodNulling="NO")

void	InitVolumeLocalizationSeq (float size[3], float center[3], float dcos[3][3])

void	InitMRTimingAndRelatedParametersMacro (float tr=UNKNOWN_TIME, float flipAngle=-999, int numEchoes=1)

void	InitMREchoMacro (float TE=UNKNOWN_TIME)

void	InitMRModifierMacro (float inversionTime=UNKNOWN_TIME)

void	InitMRTransmitCoilMacro (string coilMfg="UNKNOWN", string coilName="UNKNOWN", string coilType="UNKNOWN")

void	InitMRAveragesMacro (int numAverages=1)

void	InitRawDataModule (string contentDate, string contentTime, void *rawFile)

int	InitDerivedMRIHeader (svkDcmHeader *mri, vtkIdType dataType, string seriesDescription)

int	ConvertEnhancedMriToMriHeader (svkDcmHeader *mri, vtkIdType dataType)

virtual string	GetDcmNameFromTag (string groupElementString)=0

void	Deidentify (PHIType phiType)

void	Deidentify (PHIType phiType, string id)

void	Deidentify (PHIType phyType, string patientId, string studyId)

void	Redimension (svkDcmHeader::DimensionVector *dimensionVector)

void	Redimension (svkDcmHeader::DimensionVector dimensionVector, double newToplcOrigin, double *newPixelSpacing)

Static Public Member Functions
static int	GetNumberOfDimensionIndices (int numTimePts, int numCoils)

static void	SetDimensionIndices (unsigned int *indexValues, int numFrameIndices, int sliceNum, int timePt, int coilNum, int numTimePts, int numCoils)

static void	PrintDimensionIndexVector (svkDcmHeader::DimensionVector *dimensionVector)

static void	SwapDimensionIndexLabels (svkDcmHeader::DimensionVector *dimensionVector, svkDcmHeader::DimensionIndexLabel label1, svkDcmHeader::DimensionIndexLabel label2)

static DimensionIndexLabel	StringToDimensionIndexLabel (string dimensionIndexLabelString)

static string	DimensionIndexLabelToString (svkDcmHeader::DimensionIndexLabel label)

static DimensionIndexLabel	GetDimensionLabelFromIndex (svkDcmHeader::DimensionVector *dimensionVector, int index)

static int	GetDimensionVectorValue (svkDcmHeader::DimensionVector *dimensionVector, svkDcmHeader::DimensionIndexLabel dimensionLabel)

static int	GetDimensionVectorValue (svkDcmHeader::DimensionVector *dimensionVector, int index)

static void	SetDimensionVectorValue (svkDcmHeader::DimensionVector *dimensionVector, int index, int value)

static void	SetDimensionVectorValue (svkDcmHeader::DimensionVector *dimensionVector, svkDcmHeader::DimensionIndexLabel indexType, int value)

static bool	IsDimensionDefined (svkDcmHeader::DimensionVector *dimensionVector, svkDcmHeader::DimensionIndexLabel indexType)

static void	GetDimensionVectorIndexFromFrame (svkDcmHeader::DimensionVector dimensionVector, svkDcmHeader::DimensionVector loopIndex, int frame)

static void	GetDimensionVectorIndexFromCellID (svkDcmHeader::DimensionVector dimensionVector, svkDcmHeader::DimensionVector loopIndex, int cellID)

static int	GetCellIDFromDimensionVectorIndex (svkDcmHeader::DimensionVector dimensionVector, svkDcmHeader::DimensionVector loopIndex)

static int	GetSpatialCellIDFromDimensionVectorIndex (svkDcmHeader::DimensionVector dimensionVector, svkDcmHeader::DimensionVector loopIndex)

static int	GetNumberOfCells (svkDcmHeader::DimensionVector *dimensionVector)

static long int	GetPixelDataOffset (string fileName)

static short	GetPixelValueAsShort (long int offsetToPixelData, long int pixelIndex, string fileName)

static bool	IsFileDICOM (string fname)

static svkDcmHeader::DcmPixelDataFormat	GetVtkDataTypeFromSvkDataType (vtkIdType vtkType)

static void	GetCenterFromOrigin (double origin[3], int numVoxels[3], double voxelSpacing[3], double dcos[3][3], double center[3])

static void	GetCenterFromOrigin (svkDcmHeader *hdr, double center[3])

static void	GetOriginFromCenter (double center[3], int numVoxels[3], double voxelSpacing[3], double dcos[3][3], double origin[3])

static void	GetSpatialDimensions (svkDcmHeader::DimensionVector dimensionVector, int numVoxels)

static int	GetNumSpatialVoxels (svkDcmHeader::DimensionVector *dimensionVector)

Static Public Attributes
static const float	UNKNOWN_TIME = -1

static const string	UNKNOWN_STRING = "UNKNOWN"

Protected Member Functions
	svkDcmHeader ()

	~svkDcmHeader ()

bool	WasModified ()

Detailed Description

Class that represents an svkDcmHeaderObjet.

Member Typedef Documentation

typedef vector< map < svkDcmHeader::DimensionIndexLabel, int> > DimensionVector

Member Enumeration Documentation

anonymous enum

Enumerator
DCMTK_API

enum DcmDataOrderingDirection

Enumerator
SLICE_ORDER_UNDEFINED
INCREMENT_ALONG_POS_NORMAL
INCREMENT_ALONG_NEG_NORMAL

enum DcmIodType

Supported DICOM IOD types.

Enumerator
MR_IMAGE
ENHANCED_MR_IMAGE
MR_SPECTROSCOPY
SECONDARY_CAPTURE
MULTI_FRAME_BYTE_SC
MULTI_FRAME_WORD_SC
RAW_DATA

enum DcmPixelDataFormat

Enumerator
UNDEFINED
UNSIGNED_INT_1
UNSIGNED_INT_2
SIGNED_INT_2
SIGNED_FLOAT_4
SIGNED_FLOAT_8

enum DimensionIndexLabel

Enumerator
COL_INDEX
ROW_INDEX
SLICE_INDEX
TIME_INDEX
CHANNEL_INDEX
EPSI_ACQ_INDEX

enum Orientation

Enumerator
UNKNOWN_ORIENTATION
AXIAL
CORONAL
SAGITTAL

enum PHIType

Enumerator
PHI_IDENTIFIED
PHI_LIMITED
PHI_DEIDENTIFIED

Constructor & Destructor Documentation

svkDcmHeader ( )

protected

References svkDcmHeader::INCREMENT_ALONG_POS_NORMAL.

~svkDcmHeader ( )

protected

Member Function Documentation

void AddDimensionIndex	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionIndexLabel	indexType,
		int	maxIndex = `0`
	)

Adds a dimension to the existing DimensionVector. Applies the new dimension to the DICOM DimensionIndexSequence. By default sets the size of the new dimension to 1 (max value = 0) in the DimensionVector. This is typically not a spatial dimension so the origin/toplc do not change

References svkDcmHeader::IsDimensionDefined(), and svkDcmHeader::Redimension().

Referenced by svkIOD::InitMultiFrameDimensionModule(), svkGEPFileMapper::InitPerFrameFunctionalGroupMacros(), and svkGEPFileMapper::ReorderEPSI().

virtual void AddSequenceItemElement	(	const char *	parentSeqName,
		int	parentSeqItemPosition,
		const char *	elementName
	)

pure virtual

Method to add a nested SQ element in the specified item of the parent sequence.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		string	value,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add an item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		char *	values,
		int	numValues,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add a multi-valued item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		unsigned short *	values,
		int	numValues,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add a multi-valued item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		unsigned int *	values,
		int	numValues,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add a multi-valued item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		float *	values,
		unsigned long int	numValues,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add a multi-valued item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		int	value,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add an item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		long int	value,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add an item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		float	value,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add an item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void AddSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		double	value,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to add an item to a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual void ClearElement ( const char * elementName )

pure virtual

Method to clear all items from a sequence of items

Implemented in svkDcmtkAdapter.

Referenced by svkDICOMMRSWriter::Write().

virtual void ClearSequence ( const char * parentSeqName )

pure virtual

Method to clear all items from a sequence of items

Implemented in svkDcmtkAdapter.

Referenced by svkDcmHeader::InitMultiFrameDimensionModule(), svkDcmHeader::InitPerFrameFunctionalGroupSequence(), svkDcmHeader::InitPlaneOrientationMacro(), svkVoxelTaggingUtils::RemoveTagFromVoxelData(), and svkMriZeroFill::RequestData().

int ConvertEnhancedMriToMriHeader	(	svkDcmHeader *	mri,
		vtkIdType	dataType
	)

Initializes an MR Image Storage header from an Enhanced MRI Storage header.

References svkDcmHeader::CopySequence(), svkDcmHeader::ElementExists(), svkDcmHeader::GetIntValue(), svkDcmHeader::GetPixelDataType(), svkDcmHeader::GetStringSequenceItemElement(), svkDcmHeader::GetStringValue(), svkDcmHeader::InitGeneralSeriesModule(), svkDcmHeader::InitGeneralStudyModule(), svkDcmHeader::InitImagePixelModule(), svkDcmHeader::InitImagePlaneModule(), svkDcmHeader::InitMRImageModule(), svkDcmHeader::InitPatientModule(), and svkDcmHeader::SetValue().

Referenced by svkDICOMMRIWriter::Write().

virtual void CopyDcmHeader ( svkDcmHeader * headerCopy )

pure virtual

Copies the current DICOM header to the headerCopy, generating new series and instance UIDs, but retaining the reference header studyUID. VTK doesn't support copy constructors, so this is a method.

Parameters

headerCopy header object to copy current object into.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmHeader::MakeDerivedDcmHeader().

virtual void CopySequence	(	svkDcmHeader *	target,
		const char *	seqName
	)

pure virtual

Method to copy a sequence from one header to another. Useful when when creating derived datasets.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader().

virtual void CreateIOD ( DcmIodType iodType )

pure virtual

Factory method with specific imlementation in adapter sub-class. create the implementation specific adaptee type (e.g. DcmFileFormat for DCMTK).

Implemented in svkDcmtkAdapter.

void Deidentify ( PHIType phiType )

Replaces PHI field with "DEIDENTIFIED" string. If phiType is LIMITED, then dates are preserved. This method does not look at private or nested tags. 0008,0018 SOPInstanceUID=UIDROOT,SOPInstanceUID 0008,0020 StudyDate 0008,0021 SeriesDate 0008,0022 AcquisitionDate 0008,0023 ContentDate 0008,0050 AccessionNumber 0008,0080 InstitutionName 0008,0090 ReferringPhysicianName 0008,1060 NameOfPhysiciansReadingStudy 0008,1155 RefSOPInstanceUID 0010,0010 PatientName 0010,0020 PatientID 0010,0030 PatientBirthDate 0010,1000 OtherPatientIDs 0010,1001 OtherPatientNames 0010,1040 PatientAddress 0010,1060 PatientMotherBirthName 0010,2154 PatientTelephoneNumbers 0020,000D StudyInstanceUID 0020,000E SeriesInstanceUID 0020,0010 StudyID 0020,0052 FrameOfReferenceUID 0028,0301 BurnedInAnnotation 0032,1032 RequestingPhysician 0040,1001 RequestedProcedureID 0040,0009 ScheduledProcedureStepID 0040,A124 UID 0088,0140 StorageMediaFileSetUID 3006,0024 ReferencedFrameOfReferenceUID 3006,00C2 RelatedFrameOfReferenceUID

Referenced by svkDcmHeader::Deidentify().

void Deidentify	(	PHIType	phiType,
		string	id
	)

Replaces PHI field with id. If phiType is LIMITED, then dates are preserved. This method does not look at private or nested tags. 0008,0018 SOPInstanceUID=UIDROOT,SOPInstanceUID 0008,0020 StudyDate 0008,0021 SeriesDate 0008,0022 AcquisitionDate 0008,0023 ContentDate 0008,0050 AccessionNumber 0008,0080 InstitutionName 0008,0090 ReferringPhysicianName 0008,1060 NameOfPhysiciansReadingStudy 0008,1155 RefSOPInstanceUID 0010,0010 PatientName 0010,0020 PatientID 0010,0030 PatientBirthDate 0010,1000 OtherPatientIDs 0010,1001 OtherPatientNames 0010,1040 PatientAddress 0010,1060 PatientMotherBirthName 0010,2154 PatientTelephoneNumbers 0020,000D StudyInstanceUID 0020,000E SeriesInstanceUID 0020,0010 StudyID 0020,0052 FrameOfReferenceUID 0028,0301 BurnedInAnnotation 0032,1032 RequestingPhysician 0040,1001 RequestedProcedureID 0040,0009 ScheduledProcedureStepID 0040,A124 UID 0088,0140 StorageMediaFileSetUID 3006,0024 ReferencedFrameOfReferenceUID 3006,00C2 RelatedFrameOfReferenceUID

References svkDcmHeader::Deidentify().

void Deidentify	(	PHIType	phiType,
		string	patientId,
		string	studyId
	)

Replaces PHI patient fields with patientId, study fields and all other PHI fields with studyId. If phiType is LIMITED, then dates are preserved. This method does not look at private nested tags. 0008,0018 SOPInstanceUID=UIDROOT,SOPInstanceUID 0008,0020 StudyDate 0008,0021 SeriesDate 0008,0022 AcquisitionDate 0008,0023 ContentDate 0008,0050 AccessionNumber 0008,0080 InstitutionName 0008,0090 ReferringPhysicianName 0008,1060 NameOfPhysiciansReadingStudy 0008,1155 RefSOPInstanceUID 0010,0010 PatientName 0010,0020 PatientID 0010,0030 PatientBirthDate 0010,1000 OtherPatientIDs 0010,1001 OtherPatientNames 0010,1040 PatientAddress 0010,1060 PatientMotherBirthName 0010,2154 PatientTelephoneNumbers 0020,000D StudyInstanceUID 0020,000E SeriesInstanceUID 0020,0010 StudyID 0020,0052 FrameOfReferenceUID 0028,0301 BurnedInAnnotation 0032,1032 RequestingPhysician 0040,1001 RequestedProcedureID 0040,0009 ScheduledProcedureStepID 0040,A124 UID 0088,0140 StorageMediaFileSetUID 3006,0024 ReferencedFrameOfReferenceUID 3006,00C2 RelatedFrameOfReferenceUID

References svkDcmHeader::ElementExists(), svkDcmHeader::GenerateUniqueUID(), svkDcmHeader::ModifyValueRecursive(), svkDcmHeader::PHI_DEIDENTIFIED, svkDcmHeader::PHI_LIMITED, and svkDcmHeader::SetValue().

string DimensionIndexLabelToString ( svkDcmHeader::DimensionIndexLabel label )

static

Convert between strng and svkDcmHeader::DimensionIndexLabel These are the string representations of the DICOM DimensionIndexLabel attribute.

Referenced by svkDcmHeader::InitMultiFrameDimensionModule(), svkDcmHeader::PrintDimensionIndexVector(), and svkDcmHeader::RemoveDimensionIndex().

virtual bool ElementExists	(	const char *	elementName,
		const char *	parentSeqName = `NULL`
	)

pure virtual

Check whether an element exists in the DICOM header object.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmRawDataReader::CanReadFile(), svkDcmVolumeReader::ContainsProprietaryContent(), svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkDcmHeader::Deidentify(), svkDcmSegmentationVolumeReader::ExecuteInformation(), svkDcmRawDataReader::ExtractFiles(), svkDcmHeader::GetDimensionIndexLabel(), svkIdfVolumeWriter::GetHeaderString(), svkDcmHeader::GetOrigin(), svkDcmVolumeReader::InitFileNames(), svkGEPFileMapperUCSF::InitSatBandsFromXML(), svkVoxelTaggingUtils::IsImageVoxelTagData(), and svkMriImageFFT::RequestData().

virtual string GenerateUniqueUID ( )

pure virtual

Utility method to generate a new unique DICOM UID.

Implemented in svkDcmtkAdapter.

Referenced by svkGEPFileReader::Deidentify(), svkDcmHeader::Deidentify(), and svkDcmHeader::MakeDerivedDcmHeader().

virtual void GetByteValue	(	const char *	name,
		char *	values,
		long unsigned int	numValues
	)

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

int GetCellIDFromDimensionVectorIndex	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionVector *	loopIndex
	)

static

References svkDcmHeader::GetDimensionVectorValue().

Referenced by svkEPSIReorder::CombineLobes(), svk4DImageData::GetImage(), svkGEPFileMapper::ReorderEPSI(), svkMrsSingleVoxelSincExtraction::RequestData(), and svk4DImageData::SetImage().

void GetCenterFromOrigin	(	double	origin[3],
		int	numVoxels[3],
		double	voxelSpacing[3],
		double	dcos[3][3],
		double	center[3]
	)

static

Referenced by svkDcmHeader::GetCenterFromOrigin(), svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkDcmHeader::Redimension(), and svkVarianUCSFEPSI2DMapper::RedimensionData().

void GetCenterFromOrigin	(	svkDcmHeader *	hdr,
		double	center[3]
	)

static

References svkDcmHeader::GetCenterFromOrigin(), svkDcmHeader::GetDataDcos(), svkDcmHeader::GetIntValue(), svkDcmHeader::GetNumberOfSlices(), svkDcmHeader::GetOrigin(), and svkDcmHeader::GetPixelSpacing().

void GetDataDcos	(	double	dcos[3][3],
		DcmDataOrderingDirection	sliceOrderVal = `SLICE_ORDER_UNDEFINED`
	)

Returns the 3x3 DCOS matrix with slice vector indicating the direction of data ordering in the data set. i.e. in LPS, 0,0,-1 indicates data is ordered by slice from S to I.

References svkDcmHeader::GetNormalVector(), svkDcmHeader::GetOrientation(), svkDcmHeader::INCREMENT_ALONG_NEG_NORMAL, and svkDcmHeader::SLICE_ORDER_UNDEFINED.

virtual string GetDcmNameFromTag ( string groupElementString )

pure virtual

Implemented in svkDcmtkAdapter.

string GetDcmPatientName ( string PatientName )

Converts a string representation of a patient name to a DICOM VR = PN representation. "[lastName[^firstName[^middleName[^namePrefix[^nameSuffix]]]]"

Parameters

PatientName space delimited patient name string

Referenced by svkPhilipsSMapper::InitPatientModule(), svkVarianFidMapper::InitPatientModule(), and svkDcmHeader::SetDcmPatientName().

string GetDimensionIndexLabel ( int dimensionIndexNumber )

Gets the index labe at the specified DimensionIndex position( start index at 0)

References svkDcmHeader::ElementExists(), svkDcmHeader::GetNumberOfItemsInSequence(), and svkDcmHeader::GetStringSequenceItemElement().

int GetDimensionIndexPosition ( string indexLabel )

Gets the position of the index representing the specified dimension type from the DimensionIndexSequence. e.g. given 3 indices "0/1/2", which one represents slice, coil number, etc. Returns -1 if dimension can't be determined.

References svkDcmHeader::GetNumberOfItemsInSequence(), and svkDcmHeader::GetStringSequenceItemElement().

Referenced by svkMriImageData::GetVolumeIndexForFrame(), and svkDcmHeader::RemoveDimensionIndex().

svkDcmHeader::DimensionVector GetDimensionIndexVector ( )

Returns a data structure representing the current data set dimensions and dimension labels. This includes the 3 spatial dimensions: cols, rows, and DimensionIndexSequence. which includes at least the slice index, but often additional dimensions. Returns a vector or maps. The vector order is from innermost data looping in the PerFrameFunctionalGroup sequence, to outter most. Slice is always present and represents the first index in thsi sequence. vector index: position in dimension index sequence

map: string key representing the dimensionIndexLabel
map: int max index value representing the size-1 of the dimension in the current data set

References svkDcmHeader::WasModified().

svkDcmHeader::DimensionIndexLabel GetDimensionLabelFromIndex	(	svkDcmHeader::DimensionVector *	dimensionVector,
		int	index
	)

static

Gets the Dimension label for the specified numeric index

void GetDimensionVectorIndexFromCellID	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionVector *	loopIndex,
		int	cellID
	)

static

References svkDcmHeader::GetDimensionVectorValue(), and svkDcmHeader::SetDimensionVectorValue().

Referenced by svkMRSAutoPhase::AutoPhaseExecute(), svkMRSAutoPhase::AutoPhaseSpectrum(), svkEPSIReorder::CombineLobes(), svkMRSZeroOrderPhase::FitPhase(), svkMRSFirstPointPhase::FitPhase(), svkHSVD::GetFitSuccessStatus(), svkMrsImageData::InitializeDataArrays(), svkImageData::RemoveArrays(), svkGEPFileMapper::ReorderEPSI(), svkMrsImageFlip::RequestData(), svkMrsSingleVoxelSincExtraction::RequestData(), svkEPSIPhaseCorrect::RequestData(), svkMrsImageFFT::RequestDataSpatial(), and svkMrsImageFFT::RequestDataSpectral().

void GetDimensionVectorIndexFromFrame	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionVector *	loopIndex,
		int	frame
	)

static

References svkDcmHeader::GetDimensionVectorValue(), and svkDcmHeader::SetDimensionVectorValue().

Referenced by svkDcmHeader::GetSliceForFrame().

int GetDimensionVectorValue	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionIndexLabel	dimensionLabel
	)

static

Get the value of the specified dimension: Default is 1 point (or max index = 0)

int GetDimensionVectorValue	(	svkDcmHeader::DimensionVector *	dimensionVector,
		int	index
	)

static

Get the value of the specified dimension. The index starts at 2 for slice, the inner most loop in any DimensionVector.

virtual double GetDoubleSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual double GetDoubleValue ( const char * name )

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

Referenced by svkDSCDeltaR2::RequestData().

virtual float GetFloatSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`,
		int	pos = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmRawDataReader::ExtractFiles(), svkMrsImageData::GenerateSelectionBox(), svkMrsImageData::GetSelectionBoxDimensions(), svkMrsImageData::GetSelectionBoxSpacing(), and svkGEPFileMapperUCSF::InitSatBandsFromXML().

virtual void GetFloatSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		float *	values,
		int	numValues,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual float GetFloatValue ( const char * name )

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

Referenced by svkApodizationWindow::GetWindowResolution(), svkHSVD::RequestData(), and svkSpecPoint::SetDcmHeader().

virtual void GetFloatValue	(	const char *	name,
		float *	values,
		long unsigned int	numValues
	)

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

virtual int GetIntSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`,
		int	pos = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Parameters

seqName	camel case string name of DICOM field
seqItemPosition	int value for sequence item in which element is found
elementName	camel case string name of dicom field
parentSeqName	optional camel case string name of parent DICOM sequence.
parentSeqItemPosition	optional int value for parent sequence item.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmRawDataReader::ExtractFiles(), svkDcmHeader::GetNumberOfFramesInDimension(), svkVoxelTaggingUtils::GetTagValue(), and svkMriImageData::GetVolumeIndexForFrame().

virtual int GetIntValue ( const char * name )

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

Referenced by svkEPSIReorder::CombineLobes(), svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkGESigna5XReader::ExecuteInformation(), svkDcmHeader::GetCenterFromOrigin(), svkDICOMEnhancedMRIWriter::GetDataLength(), svkDICOMMRIWriter::GetDataLength(), svkUtils::GetDefaultSecondaryCaptureDirectory(), svkUCSFUtils::GetDICOMFileName(), svkIdfVolumeWriter::GetHeaderString(), svkImageData::GetImageCenter(), svkImageWriterFactory::GetNewSeriesFilePattern(), svkEPSIReorder::GetNumSamplesPerLobe(), svkDcmHeader::GetPixelDataType(), svkDICOMImageWriter::GetPixelRange(), svkImageData::GetSliceCenter(), svkGEPostageStampReader::InitDcmHeader(), svkDcmMriVolumeReader::InitDcmHeader(), svkBrukerDCMMRSReader::InitDcmHeader(), svkDcmHeader::InitDerivedMRIHeader(), svkMrsImageData::InitializeDataArrays(), svkApodizationWindow::InitializeWindow(), svkGEPFileMapper::InitK0Sampled(), svkDICOMEnhancedMRIWriter::InitPixelData(), svkDcmVolumeReader::InitSliceOrder(), svkGEPFileMapper::ModifyBehavior(), svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkGEPFileMapperUCSFfidcsiDev0::ReadData(), svkVarianFidMapper::ReadFidFile(), svkVarianCSFidMapper::ReadFidFile(), svkPhilipsSMapper::ReadSDATFile(), svkHSVD::RemoveLipidOn(), svkVarianUCSFEPSI2DMapper::ReorderEPSIData(), svkAlgoTemplate::RequestData(), svkMrsImageFlip::RequestData(), svkMrsApodizationFilter::RequestData(), svkEPSIPhaseCorrect::RequestData(), svkMRSNoise::RequestData(), svkMrsZeroFill::RequestData(), svkHSVD::RequestData(), svkMrsZeroFill::RequestDataSpatial(), svkMrsZeroFill::RequestDataSpectral(), svkMrsZeroFill::RequestInformation(), svkVarianUCSFEPSI2DMapper::SetCellSpectrum(), svkVarianCSFidMapper::SetCellSpectrum(), svkPhilipsSMapper::SetCellSpectrum(), svkVarianFidMapper::SetCellSpectrum(), svkGEPFileMapper::SetCellSpectrum(), svkSpecPoint::SetDcmHeader(), svkImageReader2::SetupOutputExtent(), svkMRSAutoPhase::SVKRequestDataPreExec(), svkImageData::SyncVTKImageDataToDcmHeader(), svkDICOMMRIWriter::Write(), and svkDICOMSCWriter::Write().

virtual long int GetLongIntSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`,
		int	pos = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Parameters

seqName	camel case string name of DICOM field
seqItemPosition	int value for sequence item in which element is found
elementName	camel case string name of dicom field
parentSeqName	optional camel case string name of parent DICOM sequence.
parentSeqItemPosition	optional int value for parent sequence item.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmRawDataReader::ExtractFiles().

void GetNormalVector ( double normal[3] )

Returns the right handed normal vector to the slice defined by DICOM imageOrientationPatient. from the DICOM header.

References svkDcmHeader::GetOrientation().

Referenced by svkGESigna5XReader::ExecuteInformation(), svkDcmHeader::GetDataDcos(), svkDcmVolumeReader::InitFileNames(), svkVarianCSFidMapper::InitPlaneOrientationMacro(), svkPhilipsSMapper::InitPlaneOrientationMacro(), svkVarianFidMapper::InitPlaneOrientationMacro(), svkGEPFileMapper::InitPlaneOrientationMacro(), svkDcmHeader::InitPlaneOrientationMacro(), and svkDcmVolumeReader::InitSliceOrder().

int GetNumberOfCells ( svkDcmHeader::DimensionVector * dimensionVector )

static

References svkDcmHeader::GetDimensionVectorValue().

Referenced by svkMRSAutoPhase::AutoPhaseExecute(), svkEPSIReorder::CombineLobes(), svkLCModelCoordReader::ExecuteDataWithInformation(), svkMrsImageData::InitializeDataArrays(), svkGEPFileMapperUCSFfidcsiDev0::ReadData(), svkImageData::RemoveArrays(), svkGEPFileMapper::ReorderEPSI(), svkMrsImageFlip::RequestData(), svkMrsApodizationFilter::RequestData(), svkMrsSingleVoxelSincExtraction::RequestData(), svkMRSNoise::RequestData(), svkEPSIPhaseCorrect::RequestData(), svkHSVD::RequestData(), svkMrsImageFFT::RequestDataSpatial(), svkMrsZeroFill::RequestDataSpectral(), svkMrsImageFFT::RequestDataSpectral(), svkMRSAutoPhase::SVKRequestDataPreExec(), and svkMRSAutoPhase::ValidateInput().

int GetNumberOfCoils ( )

Returns the number of coils the DcmHeader. Parses FrameContentSequence for the number of coils, if specified in the Multi Frame Dimension Module

References svkDcmHeader::WasModified().

Referenced by svkMrsImageData::GetNumberOfChannels(), svkMrsImageData::GetVolumeIndexSize(), svk4DImageData::GetVolumeIndexSize(), svkVarianFidMapper::ReadFidFile(), svkVarianCSFidMapper::ReadFidFile(), svkPhilipsSMapper::ReadSDATFile(), svkGEPFileMapper::RedimensionModifiedSVData(), svkVarianUCSFEPSI2DMapper::RemoveArrays(), svkIntegratePeak::RequestData(), svkMultiCoilPhase::RequestData(), svkMrsImageFFT::RequestDataSpatial(), svkMrsZeroFill::RequestDataSpatial(), and svkMriImageData::SyncCellRepresentationToPixelData().

int GetNumberOfDimensionIndices	(	int	numTimePts,
		int	numCoils
	)

static

Get the number of Dimension indices required for specifying the frame's slice, time, coil. See FrameContentSequence DimensionIndexValues

virtual int GetNumberOfElements ( const char * elementName )

pure virtual

Returns the number of elements in the data set matching the specified elementName.

Implemented in svkDcmtkAdapter.

int GetNumberOfFrames ( svkDcmHeader::DimensionVector * dimensionVector )

References svkDcmHeader::GetDimensionVectorValue().

Referenced by svkDcmHeader::GetNumberOfFramesInDimension(), and svkDcmHeader::InitPerFrameFunctionalGroupSequence().

int GetNumberOfFramesInDimension ( int dimensionIndex )

Gets the number of frames in the specified dimension. Iterates over each frame in the FrameContentSequence and gets the set of unique values for the specified dimensionIndex. This is therefore the dimension size of the specified index.

References svkDcmHeader::GetIntSequenceItemElement(), and svkDcmHeader::GetNumberOfFrames().

Referenced by svkMriImageData::GetVolumeIndexForFrame().

virtual int GetNumberOfItemsInSequence ( const char * seqName )

pure virtual

Returns the number of items in the specified sequence.

Implemented in svkDcmtkAdapter.

Referenced by svkVoxelTaggingUtils::AddTagToVoxelData(), svkDcmRawDataReader::ExtractFiles(), svkMrsImageData::GenerateSelectionBox(), svkDcmHeader::GetDimensionIndexLabel(), svkDcmHeader::GetDimensionIndexPosition(), svkVoxelTaggingUtils::GetNumberOfTags(), svkMrsImageData::GetSelectionBoxDimensions(), svkMrsImageData::GetSelectionBoxSpacing(), svkMriImageData::GetVolumeIndexForFrame(), svkMrsImageData::HasSelectionBox(), svkGEPFileMapper::InitSatBand(), and svkVoxelTaggingUtils::InsertTagIntoHeader().

virtual int GetNumberOfItemsInSequence	(	const char *	seqName,
		const char *	parentSeqName,
		int	parentSeqItemPosition
	)

pure virtual

Returns the number of items in a nested sequence

Implemented in svkDcmtkAdapter.

int GetNumberOfSlices ( )

References svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::GetDimensionVectorValue(), and svkDcmHeader::SLICE_INDEX.

Referenced by svkVoxelTaggingUtils::FixPerFrameFunctionalGroupSequence(), svkDcmHeader::GetCenterFromOrigin(), svkDICOMEnhancedMRIWriter::GetDataLength(), svkIdfVolumeWriter::GetHeaderString(), svkImageData::GetImageCenter(), svkImageData::GetSliceCenter(), svkDcmHeader::InitDerivedMRIHeader(), svkGEPFileMapper::InitK0Sampled(), svkDICOMEnhancedMRIWriter::InitPixelData(), svkDcmVolumeReader::InitSliceOrder(), svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkVarianFidMapper::ReadFidFile(), svkPhilipsSMapper::ReadSDATFile(), svkGEPFileMapper::RedimensionModifiedSVData(), svkAlgoTemplate::RequestData(), svkBurnResearchPixels::RequestData(), svkMrsZeroFill::RequestDataSpatial(), svkMrsZeroFill::RequestInformation(), svkVarianUCSFEPSI2DMapper::SetCellSpectrum(), svkPhilipsSMapper::SetCellSpectrum(), svkVarianFidMapper::SetCellSpectrum(), svkImageReader2::SetupOutputExtent(), svkImageData::SyncVTKImageDataToDcmHeader(), and svkDICOMMRIWriter::Write().

int GetNumberOfTimePoints ( )

Returns the number of time points from the DcmHeader. Parses FrameContentSequence for the number of time points, if specified in the Multi Frame Dimension Module

References svkDcmHeader::WasModified().

Referenced by svkMultiCoilPhase::CalculateCenterPhase(), svkDSCRecovery::GetRecovery(), svkMrsImageData::GetVolumeIndexSize(), svkVarianFidMapper::ReadFidFile(), svkVarianCSFidMapper::ReadFidFile(), svkPhilipsSMapper::ReadSDATFile(), svkVarianUCSFEPSI2DMapper::RedimensionData(), svkVarianUCSFEPSI2DMapper::RemoveArrays(), svkIntegratePeak::RequestData(), svkMrsSingleVoxelSincExtraction::RequestData(), svkMrsLinearPhase::RequestData(), svkMultiCoilPhase::RequestData(), svkMRSKinetics::RequestData(), svkMrsImageFFT::RequestDataSpatial(), svkMrsZeroFill::RequestDataSpatial(), svkMriImageData::SyncCellRepresentationToPixelData(), and svkDdfVolumeWriter::Write().

int GetNumSpatialVoxels ( svkDcmHeader::DimensionVector * dimensionVector )

static

Get the spatial dimensions from the DimensionVector. This is 1 more than the max value in each index: If this is a 2x2x1 data set, the max indices would be 1,1,0, but the spatial dimension would return 2,2,1.

References svkDcmHeader::GetSpatialDimensions().

Referenced by svkMRSAutoPhase::AutoPhaseExecute(), svkMRSZeroOrderPhase::FitPhase(), svkMRSFirstOrderPhase::FitPhase(), svkMRSFirstPointPhase::FitPhase(), and svkMRSAutoPhase::SVKRequestDataPreExec().

void GetOrientation ( double orientation[2][3] )

Get the DICOM orientation vectors (in plane vector in direction of row and column data) from the DICOM header.

References svkDcmHeader::WasModified().

Referenced by svkDcmHeader::GetDataDcos(), svkIdfVolumeWriter::GetHeaderString(), and svkDcmHeader::GetNormalVector().

int GetOrientationIndex ( svkDcmHeader::Orientation orientation )

This method is used for determining the index of the dcos matrix that corresponds to the normal vector of a given user defined slice orientation in LPS coordinates.

Each row of the dcos represents the COLUMN, ROW, or SLICE dimension of the data as defined by the data ordering.

We are going to check them each sequentially to make sure that if two rows have the same magnitude in a given direction they are assigned to different slice view orientations.

EXAMPLE 1-------------------------------------------------------------------—

For example if we have the dcos:

                  LR        AP        SI

COLUMN INDEX       1         0         0 
ROW INDEX          0         1         0 
SLICE INDEX        0         0         1

If user requests the index of a coronal view of the data:

int coronalIndex = GetOrientationIndex( svkDcmHeader::CORONAL )

First we will find the AXIAL direction. This is defined as the greatest absolute value in the SI column. It is clear that this is the SLICE INDEX. Second we search for the CORONAL direction– this is the greatest absolute value in the AP column and is clearly the COLUMN INDEX. Lastly we look for the SAGITTAL directions which is again clear and is the ROW INDEX Result: AXIAL index = 2 <– This is the data's orientation type CORONAL index = 1 SAGITTAL index = 0

And the method would return the value 1, for CORONAL

GetOrientationIndex( svkDcmHeader::CORONAL ) = 1;

EXAMPLE 2-------------------------------------------------------------------—

For Example if we have the dcos:

                  LR        AP        SI

COLUMN INDEX       0         1         0 
ROW INDEX          1         0         0 
SLICE INDEX        0         0         1

If user requests the index of a sagittal view of the data:

int axialIndex = GetOrientationIndex( svkDcmHeader::AXIAL )

First we will find the AXIAL direction. This is defined as the greatest absolute value in the SI column. It is clear that this is the SLICE INDEX. Second we search for the CORONAL direction– this is the greatest absolute value in the AP column and is clearly the ROW INDEX. Lastly we look for the SAGITTAL directions which is again clear and is the COLUMN INDEX

Result:
    AXIAL    index = 2 <-- This is the data's orientation type
    CORONAL  index = 0
    SAGITTAL index = 1

And the method would return the value 2, for AXIAL

GetOrientationIndex( svkDcmHeader::AXIAL ) = 2;

EXAMPLE 3-------------------------------------------------------------------—

For Example if we have the dcos:

                   LR        AP        SI

COLUMN INDEX    0.7071    0.5000    0.5000
ROW INDEX            0    0.7071   -0.7071
SLICE INDEX    -0.7071    0.5000    0.5000

If user requests the index of a sagittal view of the data:

int coronalIndex = GetOrientationIndex( svkDcmHeader::CORONAL )

This case is of an image rotated 45 degrees in two dimensions. In this scenario the data is so oblique that defining AXIAL, SAGITTAL, and CORONAL is somewhat arbitrary.

First we will find the AXIAL direction. This is defined as the greatest absolute value in the SI column. In this case we would take the ROW INDEX and declare that the AXIAL direction. Next we would search for the CORONAL direction. The highest component in the AP direction is also the COLUMN INDEX, but we have already defined that as the AXIAL direction so we take the next highest which is the same for both the COLUMN and SLICE INDEX. In this case it is arbitrary, the method searches in the order ROW, COLUMN, SLICE and searches for values greater than or equal to so it would take the SLICE INDEX. Since the only INDEX left is the COLUMN INDEX that will be our SAGITTAL direction.

Result:
    AXIAL    index = 1 
    CORONAL  index = 2 <-- This is the data's orientation type
    SAGITTAL index = 0

And the method would return the value 0, for CORONAL

GetOrientationIndex( svkDcmHeader::CORONAL ) = 0;

Parameters

orientation the view orientation you want to get the index of

Returns: the index, 0 is COLUMN, 1 is ROW, 2 is SLICE as defined by the data ordering.

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDcmHeader::GetDataDcos(), and svkDcmHeader::SAGITTAL.

Referenced by svkImageData::GetOrientationIndex(), and svkDcmHeader::GetOrientationType().

svkDcmHeader::Orientation GetOrientationType ( )

Determine if the data set is coronal/sagital/axial

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDcmHeader::GetOrientationIndex(), svkDcmHeader::SAGITTAL, and svkDcmHeader::UNKNOWN_ORIENTATION.

Referenced by svkImageData::FindMatchingSlice(), svkImageData::GetFirstSlice(), svkImageViewer2::GetImageActor(), svkImageData::GetLastSlice(), svk4DImageData::GetNumberOfSlices(), svkImageData::GetNumberOfSlices(), svkImageData::GetSliceCenter(), svkImageData::GetSliceNormal(), svkImageData::GetSliceOrigin(), svk4DImageData::GetTlcBrcInUserSelection(), and svkMrsImageData::IsSliceInSelectionBox().

int GetOrigin	(	double	origin[3],
		int	sliceNumber = `0`
	)

Get the origin of the data set.

References svkDcmHeader::ElementExists(), svkDcmHeader::GetStringSequenceItemElement(), and svkDcmHeader::WasModified().

Referenced by svkDataValidator::AreDataOriginsSame(), svkGESigna5XReader::ExecuteInformation(), svkVoxelTaggingUtils::FixPerFrameFunctionalGroupSequence(), svkDcmHeader::GetCenterFromOrigin(), svkImageData::GetClosestSlice(), svkIdfVolumeWriter::GetHeaderString(), svkImageData::GetImageCenter(), svkImageData::GetIndexFromPosition(), svkImageData::GetPositionFromIndex(), svkImageData::GetSliceCenter(), svkDcmHeader::InitDerivedMRIHeader(), svkDcmVolumeReader::InitSliceOrder(), svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkVarianUCSFEPSI2DMapper::RedimensionData(), svkGEPFileMapper::RedimensionModifiedSVData(), svkMrsZeroFill::RequestDataSpatial(), svkDynamicImageMap::RequestInformation(), svkMrsSingleVoxelSincExtraction::RequestInformation(), svkDynamicMRIAlgoTemplate::RequestInformation(), svkObliqueReslice::RequestInformation(), svkMRSKinetics::RequestInformation(), svkMetaboliteMap::RequestInformation(), svkMRSAutoPhase::RequestInformation(), svkImageReader2::SetupOutputInformation(), and svkImageData::SyncVTKImageDataToDcmHeader().

virtual int GetOriginalXFerSyntax ( )

pure virtual

Return the original xfer syntax for the loaded data.

Parameters

fileName name of the output file root (no extension).

Returns 0 for success, 1 for failure.

Implemented in svkDcmtkAdapter.

void GetOriginFromCenter	(	double	center[3],
		int	numVoxels[3],
		double	voxelSpacing[3],
		double	dcos[3][3],
		double	origin[3]
	)

static

Referenced by svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkDcmHeader::Redimension(), and svkVarianUCSFEPSI2DMapper::RedimensionData().

long int GetPixelDataOffset ( string fileName )

static

References svkDICOMParser::GetPixelDataFileOffset().

int GetPixelDataType ( int vtkDataType = svkDcmHeader::UNDEFINED )

Get the format that specifies the word size and representation in the DICOM PixelData. 4Byte representations are ambiguous and can be float or int, thus the vtkDataType arg.

References svkDcmHeader::GetIntValue(), svkDcmHeader::SIGNED_FLOAT_4, svkDcmHeader::SIGNED_FLOAT_8, svkDcmHeader::SIGNED_INT_2, svkDcmHeader::UNSIGNED_INT_1, and svkDcmHeader::UNSIGNED_INT_2.

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkIdfVolumeWriter::GetHeaderString(), svkDICOMImageWriter::GetPixelRange(), and svkDICOMImageWriter::GetScaledPixels().

void GetPixelSize ( double size[3] )

Get the size of the voxels.

References svkDcmHeader::WasModified().

Referenced by svkIdfVolumeWriter::GetHeaderString(), svkPhilipsSMapper::InitMRSpectroscopyFOVGeometryMacro(), svkVarianUCSF2DcsiMapper::InitPerFrameFunctionalGroupMacros(), svkVarianUCSFEPSI2DMapper::InitPerFrameFunctionalGroupMacros(), svkPhilipsSMapper::InitPerFrameFunctionalGroupMacros(), svkVarianFidMapper::InitPerFrameFunctionalGroupMacros(), svkVarianCSFidMapper::InitPerFrameFunctionalGroupMacros(), svkImageReader2::SetupOutputInformation(), and svkImageData::SyncVTKImageDataToDcmHeader().

void GetPixelSpacing ( double spacing[3] )

Get the spacing of the voxels. This accounts for any gaps between samples. It is the actial spacing between samples. May differ from pixel(sample) size(thickness).

References svkDcmHeader::WasModified().

Referenced by svkDcmSegmentationVolumeReader::ExecuteInformation(), svkVoxelTaggingUtils::FixPerFrameFunctionalGroupSequence(), svkDcmHeader::GetCenterFromOrigin(), svkIdfVolumeWriter::GetHeaderString(), svkImageData::GetImageCenter(), svkImageData::GetIndexFromPosition(), svkImageData::GetPositionFromIndex(), svkImageData::GetSliceCenter(), svkDcmHeader::InitDerivedMRIHeader(), svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkDcmHeader::Redimension(), svkVarianUCSFEPSI2DMapper::RedimensionData(), svkGEPFileMapper::RedimensionModifiedSVData(), svkImageReader2::SetupOutputInformation(), and svkImageData::SyncVTKImageDataToDcmHeader().

virtual unsigned short GetPixelValue ( long unsigned int position )

pure virtual

Method to get one value from a DICOM tag by specifying it's offset. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

short GetPixelValueAsShort	(	long int	offsetToPixelData,
		long int	pixelIndex,
		string	fileName
	)

static

virtual int GetSequenceItemElementLength	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		const char *	parentSeqName,
		int	parentSeqItemPosition
	)

pure virtual

Implemented in svkDcmtkAdapter.

Referenced by svkDcmRawDataReader::ExtractFiles().

virtual void GetShortValue	(	const char *	name,
		short *	values,
		long unsigned int	numValues
	)

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

virtual unsigned short GetShortValue	(	const char *	name,
		long unsigned int	position
	)

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

int GetSliceForFrame ( int frame )

Uses the dimension index sequence to determine the slice for the frame.

References svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::GetDimensionVectorIndexFromFrame(), svkDcmHeader::GetDimensionVectorValue(), and svkDcmHeader::SLICE_INDEX.

Referenced by svkDICOMMRIWriter::Write().

int GetSpatialCellIDFromDimensionVectorIndex	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionVector *	loopIndex
	)

static

References svkDcmHeader::GetDimensionVectorValue().

Referenced by svkMRSAutoPhase::AutoPhaseSpectrum(), svkMRSZeroOrderPhase::FitPhase(), svkMRSFirstPointPhase::FitPhase(), svkHSVD::GetFitSuccessStatus(), svk4DImageData::GetImage(), svkMrsImageFFT::RequestDataSpectral(), and svk4DImageData::SetImage().

void GetSpatialDimensions	(	svkDcmHeader::DimensionVector *	dimensionVector,
		int *	numVoxels
	)

static

Get the spatial dimensions from the DimensionVector. This is 1 more than the max value in each index: If this is a 2x2x1 data set, the max indices would be 1,1,0, but the spatial dimension would return 2,2,1.

References svkDcmHeader::COL_INDEX, svkDcmHeader::ROW_INDEX, and svkDcmHeader::SLICE_INDEX.

Referenced by svk4DImageData::GetImage(), svkDcmHeader::GetNumSpatialVoxels(), svkDcmHeader::Redimension(), svkMrsImageFlip::RequestData(), and svk4DImageData::SetImage().

virtual string GetStringSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkDcmRawDataReader::ExtractFiles(), svkMrsImageData::GenerateSelectionBox(), svkDcmHeader::GetDimensionIndexLabel(), svkDcmHeader::GetDimensionIndexPosition(), svkIdfVolumeWriter::GetHeaderString(), svkDcmHeader::GetOrigin(), svkDcmEnhancedVolumeReader::GetPixelTransform(), svkVoxelTaggingUtils::GetTagName(), svkDcmHeader::InitDerivedMRIHeader(), svkSincInterpolationFilter::RequestData(), and svkDICOMMRIWriter::Write().

virtual string GetStringSequenceItemElement	(	const char *	seqName,
		int	seqItemPosition,
		const char *	elementName,
		int	pos,
		const char *	parentSeqName = `NULL`,
		int	parentSeqItemPosition = `0`
	)

pure virtual

Method to get an item's element from a DICOM Sequence by specifying the SQ name and the item's position in the sequence. Optionally, for nested sequences specify the parent SQ and item number.

Implemented in svkDcmtkAdapter.

virtual string GetStringValue ( const char * name )

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

Referenced by svkDataValidator::AreDataCompatible(), svkDcmSegmentationVolumeReader::CanReadFile(), svkDcmRawDataReader::CanReadFile(), svkGEPostageStampReader::CanReadFile(), svkDcmMrsVolumeReader::CanReadFile(), svkDcmEnhancedVolumeReader::CanReadFile(), svkDcmMriVolumeReader::CanReadFile(), svkBrukerDCMMRSReader::CanReadFile(), svkDcmVolumeReader::ContainsProprietaryContent(), svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkVoxelTaggingUtils::CreateVoxelTagData(), svkMrsImageData::EstimateDataRange(), svkStatistics::GetAutoAdjustedBinSize(), svkMrsImageData::GetClosestSlice(), svkUtils::GetDefaultSecondaryCaptureFilePattern(), svkUCSFUtils::GetDICOMFileName(), svkImageReader2::GetFileSeriesDescription(), svkDcmMriVolumeReader::GetFileType(), svkIdfVolumeWriter::GetHeaderString(), svkImageWriterFactory::GetNewSeriesFilePattern(), svkGEPFileMapper::GetNumDummyScans(), svkQuantifyMetabolites::GetRegionNameVector(), svkDcmHeader::InitDerivedMRIHeader(), svkDcmVolumeReader::InitFileNames(), svkApodizationWindow::InitializeWindow(), svkDICOMMRIWriter::InitPixelData(), svkGEPFileMapperUCSFfidcsiDev0::ModifyForPatientEntry(), svkQuantifyMetabolites::ModifyRegion(), svkMRSZeroOrderPhase::PrePhaseSetup(), svkMRSFirstPointPhase::PrePhaseSetup(), svkGEPFileMapperUCSFfidcsiDev0::ReadData(), svkVarianUCSFEPSI2DMapper::ReorderEPSIData(), svkMriImageFFT::RequestData(), svkImageThreshold::RequestData(), svkImageStatistics::RequestData(), svkMrsImageFFT::RequestDataSpatial(), svkVarianUCSFEPSI2DMapper::SetCellSpectrum(), svkVarianCSFidMapper::SetCellSpectrum(), svkPhilipsSMapper::SetCellSpectrum(), svkVarianFidMapper::SetCellSpectrum(), svkGEPFileMapper::SetCellSpectrum(), svkPlotGridView::SetInput(), svkPlotGridView::ShowView(), svkDICOMMRIWriter::Write(), and svkDICOMRawDataWriter::Write().

virtual string GetStringValue	(	const char *	name,
		int	pos
	)

pure virtual

Method to get a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

svkDcmHeader::DcmPixelDataFormat GetVtkDataTypeFromSvkDataType ( vtkIdType vtkType )

static

References svkDcmHeader::SIGNED_FLOAT_4, svkDcmHeader::SIGNED_FLOAT_8, svkDcmHeader::SIGNED_INT_2, svkDcmHeader::UNDEFINED, svkDcmHeader::UNSIGNED_INT_1, and svkDcmHeader::UNSIGNED_INT_2.

Referenced by svkImageData::CopyAndFillComponents(), and svkImageThreshold::RequestData().

int InitDerivedMRIHeader	(	svkDcmHeader *	mri,
		vtkIdType	dataType,
		string	seriesDescription
	)

Initializes an Enhanced MR Image header from an MR Spectroscopy header. This is a utility for extracting metabolite maps from MRS data, for example. Takes an initialized svkDcmHeader from an svkMriImageData object.

References svkDcmHeader::AddSequenceItemElement(), svkDcmHeader::CHANNEL_INDEX, svkDcmHeader::GetDataDcos(), svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::GetIntValue(), svkDcmHeader::GetNumberOfSlices(), svkDcmHeader::GetOrigin(), svkDcmHeader::GetPixelSpacing(), svkDcmHeader::GetStringSequenceItemElement(), svkDcmHeader::GetStringValue(), svkDcmHeader::InitGeneralSeriesModule(), svkDcmHeader::InitGeneralStudyModule(), svkDcmHeader::InitImagePixelModule(), svkDcmHeader::InitPatientModule(), svkDcmHeader::InitPerFrameFunctionalGroupSequence(), svkDcmHeader::InitPixelMeasuresMacro(), svkDcmHeader::InitPlaneOrientationMacro(), svkDcmHeader::SetDimensionVectorValue(), svkDcmHeader::SetSliceOrder(), svkDcmHeader::SetValue(), svkDcmHeader::SIGNED_FLOAT_4, svkDcmHeader::SIGNED_FLOAT_8, svkDcmHeader::SIGNED_INT_2, svkDcmHeader::SLICE_INDEX, svkDcmHeader::TIME_INDEX, and svkDcmHeader::UNSIGNED_INT_2.

Referenced by svk4DImageData::GetImage().

void InitGeneralSeriesModule	(	string	seriesNumber,
		string	seriesDescription,
		string	patientPosition
	)

Initializes the DICOM General Series Module (Series IE) Modality is set on initialztion of IOD (svkIOD).

References svkDcmHeader::SetValue().

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkDcmHeader::InitDerivedMRIHeader(), svkPhilipsSMapper::InitGeneralSeriesModule(), svkVarianFidMapper::InitGeneralSeriesModule(), and svkGEPFileMapper::InitGeneralSeriesModule().

void InitGeneralStudyModule	(	string	studyDate,
		string	studyTime,
		string	referringPhysiciansName,
		string	studyID,
		string	accessionNumber,
		string	studyInstanceUID
	)

Initializes the DICOM Patient Module (Patient IE)

References svkDcmHeader::SetValue().

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkDcmHeader::InitDerivedMRIHeader(), svkPhilipsSMapper::InitGeneralStudyModule(), svkVarianFidMapper::InitGeneralStudyModule(), and svkGEPFileMapper::InitGeneralStudyModule().

void InitImagePixelModule	(	int	rows,
		int	columns,
		svkDcmHeader::DcmPixelDataFormat	dataType
	)

Initializes the DICOM Image Pixel Module

References svkDcmHeader::SetPixelDataType(), and svkDcmHeader::SetValue().

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader(), and svkDcmHeader::InitDerivedMRIHeader().

void InitImagePlaneModule	(	string	imagePositionPatient,
		string	pixelSpacing = `""`,
		string	imageOrientationPatient = `""`,
		string	sliceThickness = `""`
	)

Initialize the ImagePlane Module. For single frame objects this may be called repeatedly changing only the value of the current instance ImagePositionPatient value.

References svkDcmHeader::SetValue().

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader().

void InitMRAveragesMacro ( int numAverages = 1 )

Initialize MR Averages Macro.

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkEnhancedMRIIOD::InitDcmHeader(), svkPhilipsSMapper::InitMRAveragesMacro(), and svkVarianFidMapper::InitMRAveragesMacro().

void InitMREchoMacro ( float TE = UNKNOWN_TIME )

Initializes the MR Echo Macro.

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkDcmSegmentationVolumeReader::ExecuteInformation(), svkEnhancedMRIIOD::InitDcmHeader(), svkPhilipsSMapper::InitMREchoMacro(), svkVarianFidMapper::InitMREchoMacro(), svkGEPFileMapper::InitMREchoMacro(), and svkGESigna5XReader::InitMREchoMacro().

void InitMRImageModule	(	string	repetitionTime,
		string	echoTime
	)

Initialize the MR Image Module.

References svkDcmHeader::SetValue().

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader().

void InitMRImagingModifierMacro	(	float	transmitFreq,
		float	pixelBandwidth,
		string	magTransfer = `"NONE"`,
		string	bloodNulling = `"NO"`
	)

Initialize MR Imaging Modifier Macro

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkGESigna5XReader::InitMRImagingModifierMacro().

void InitMRModifierMacro ( float inversionTime = UNKNOWN_TIME )

Initialize MR Modifier Macro.

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkEnhancedMRIIOD::InitDcmHeader(), svkPhilipsSMapper::InitMRModifierMacro(), svkVarianFidMapper::InitMRModifierMacro(), svkGEPFileMapper::InitMRModifierMacro(), and svkGESigna5XReader::InitMRModifierMacro().

void InitMRTimingAndRelatedParametersMacro	(	float	tr = `UNKNOWN_TIME`,
		float	flipAngle = `-999`,
		int	numEchoes = `1`
	)

Initialize MR Timing and Related Parameters Macro.

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkDcmSegmentationVolumeReader::ExecuteInformation(), svkEnhancedMRIIOD::InitDcmHeader(), svkPhilipsSMapper::InitMRTimingAndRelatedParametersMacro(), svkVarianFidMapper::InitMRTimingAndRelatedParametersMacro(), svkGEPFileMapper::InitMRTimingAndRelatedParametersMacro(), and svkGESigna5XReader::InitMRTimingAndRelatedParametersMacro().

void InitMRTransmitCoilMacro	(	string	coilMfg = `"UNKNOWN"`,
		string	coilName = `"UNKNOWN"`,
		string	coilType = `"UNKNOWN"`
	)

Initialize MR Transmit Coil Macro.

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkEnhancedMRIIOD::InitDcmHeader(), svkPhilipsSMapper::InitMRTransmitCoilMacro(), svkVarianFidMapper::InitMRTransmitCoilMacro(), svkGEPFileMapper::InitMRTransmitCoilMacro(), and svkGESigna5XReader::InitMRTransmitCoilMacro().

void InitMultiFrameDimensionModule ( svkDcmHeader::DimensionVector * dimensionVector )

Generalized version of InitMultiFrameDimensionModule that adds an item to the sequence for each dimension type represented in the DimensionVector.

References svkDcmHeader::AddSequenceItemElement(), svkDcmHeader::ClearSequence(), and svkDcmHeader::DimensionIndexLabelToString().

Referenced by svkIOD::InitMultiFrameDimensionModule(), svkDcmHeader::InitPerFrameFunctionalGroupSequence(), and svkDcmHeader::Redimension().

void InitPatientModule	(	string	PatientName,
		string	patientID,
		string	PatientBirthDate,
		string	PatientSex
	)

Initializes the DICOM Patient Module (Patient IE)

References svkDcmHeader::SetValue().

Referenced by svkDcmHeader::ConvertEnhancedMriToMriHeader(), svkDcmHeader::InitDerivedMRIHeader(), svkPhilipsSMapper::InitPatientModule(), svkVarianFidMapper::InitPatientModule(), and svkGEPFileMapper::InitPatientModule().

void InitPerFrameFunctionalGroupSequence	(	double	toplc[3],
		double	voxelSpacing[3],
		double	dcos[3][3],
		svkDcmHeader::DimensionVector *	dimensionVector
	)

Generalized form of method that uses DimensionVector. The rows of the dimensionVector contain the max index of that dimension, i.e. size -1. Initializes the Per Frame Functional Gruop Sequence and attributes derived from method args, eg. dcos -> ImageOrientationPatient.

References svkDcmHeader::ClearSequence(), svkDcmHeader::GetNumberOfFrames(), svkDcmHeader::InitMultiFrameDimensionModule(), svkDcmHeader::InitPlaneOrientationMacro(), and svkDcmHeader::SetValue().

void InitPixelMeasuresMacro	(	string	pixelSpacing,
		string	sliceThickness
	)

Initialize the Pixel Measures Macro.

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkDcmHeader::InitDerivedMRIHeader(), svkVarianUCSF2DcsiMapper::InitPixelMeasuresMacro(), svkVarianUCSFEPSI2DMapper::InitPixelMeasuresMacro(), svkPhilipsSMapper::InitPixelMeasuresMacro(), svkVarianCSFidMapper::InitPixelMeasuresMacro(), svkVarianFidMapper::InitPixelMeasuresMacro(), svkGEPFileMapper::InitPixelMeasuresMacro(), svkMriZeroFill::RequestData(), and svkMrsZeroFill::RequestDataSpatial().

void InitPixelValueTransformationMacro	(	double	slope = `1.00000`,
		double	intercept = `0.00000`
	)

Set the linear scaling factors in the Pixel Value Transformation Macro

References svkDcmHeader::AddSequenceItemElement().

Referenced by svkEnhancedMRIIOD::InitDcmHeader(), svkDICOMEnhancedMRIWriter::InitPixelData(), and svkDICOMMRIWriter::InitPixelData().

void InitPlaneOrientationMacro ( double dcos[3][3] )

References svkDcmHeader::GetNormalVector(), svkDcmHeader::INCREMENT_ALONG_NEG_NORMAL, svkDcmHeader::INCREMENT_ALONG_POS_NORMAL, and svkDcmHeader::SetSliceOrder().

Referenced by svkDcmHeader::InitDerivedMRIHeader(), and svkDcmHeader::InitPerFrameFunctionalGroupSequence().

void InitPlaneOrientationMacro ( string orientationString )

References svkDcmHeader::AddSequenceItemElement(), and svkDcmHeader::ClearSequence().

void InitRawDataModule	(	string	contentDate,
		string	contentTime,
		void *	rawFile
	)

Initialize Raw Data Module.

References svkDcmHeader::SetValue().

void InitVOILUTModule	(	float	center,
		float	width
	)

Set the linear scaling factors in the VOI LUT Module. These define the output range of pixel values to be displlayed.

References svkDcmHeader::SetValue().

Referenced by svkDICOMMRIWriter::InitPixelData().

void InitVolumeLocalizationSeq	(	float	size[3],
		float	center[3],
		float	dcos[3][3]
	)

Initializes the Volume Localization Sequence in the MRSpectroscopy DICOM object for PRESS excitation.

References svkDcmHeader::AddSequenceItemElement(), and svkDcmHeader::InsertEmptyElement().

Referenced by svkMrsImageData::Redimension().

virtual void InsertEmptyElement ( const char * name )

pure virtual

Method to set a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

Referenced by svkVoxelTaggingUtils::CreateVoxelTagData(), svkIOD::InitAcquisitionContextModule(), svkRawIOD::InitDcmHeader(), svkIOD::InitFrameOfReferenceModule(), svkMRIIOD::InitGeneralImageModule(), svkIOD::InitGeneralImageModule(), svkIOD::InitGeneralSeriesModule(), svkIOD::InitGeneralStudyModule(), svkIOD::InitImagePixelModule(), svkMRIIOD::InitMRImageModule(), svkMRSIOD::InitMRSpectroscopyDataModule(), svkMRSIOD::InitMRSpectroscopyModule(), svkIOD::InitMultiFrameDimensionModule(), svkIOD::InitMultiFrameFunctionalGroupsModule(), svkIOD::InitPatientModule(), svkSCIOD::InitSCImageModule(), svkGEPFileMapper::InitVolumeLocalizationSeq(), and svkDcmHeader::InitVolumeLocalizationSeq().

virtual void InsertUniqueUID ( const char * name )

pure virtual

Method to generate a new unique UID and insert it into the specified DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

Referenced by svkRawIOD::InitDcmHeader(), svkIOD::InitFrameOfReferenceModule(), svkIOD::InitGeneralSeriesModule(), svkIOD::InitGeneralStudyModule(), svkRawIOD::InitSOPCommonModule(), svkEnhancedMRIIOD::InitSOPCommonModule(), svkMRIIOD::InitSOPCommonModule(), svkMRSIOD::InitSOPCommonModule(), svkSCIOD::InitSOPCommonModule(), svkDcmHeader::MakeDerivedDcmHeader(), svkDynamicImageMap::RequestData(), svkDynamicMRIAlgoTemplate::RequestData(), svkMetaboliteRatioZScores::RequestData(), svkMRSKinetics::RequestData(), svkMetaboliteMap::RequestData(), svkMRSAutoPhase::SVKRequestDataPreExec(), svkDICOMRawDataWriter::Write(), and svkDICOMSCWriter::Write().

bool IsDimensionDefined	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionIndexLabel	indexType
	)

static

Set the value of the specified dimension.

Referenced by svkDcmHeader::AddDimensionIndex(), and svkDcmHeader::RemoveDimensionIndex().

bool IsFileDICOM ( string fname )

static

Check for magic DICM chars at byte 128 to test if the file is a DICOM file.

Referenced by svkDcmSegmentationVolumeReader::CanReadFile(), svkDcmRawDataReader::CanReadFile(), svkDcmMrsVolumeReader::CanReadFile(), svkGEPostageStampReader::CanReadFile(), svkDcmEnhancedVolumeReader::CanReadFile(), svkDcmMriVolumeReader::CanReadFile(), svkBrukerDCMMRSReader::CanReadFile(), and svkDcmVolumeReader::InitFileNames().

void MakeDerivedDcmHeader	(	svkDcmHeader *	headerCopy,
		string	seriesDescription
	)

Initializes the input svkDcmHeader (the copy) from this. Also generates new seriesUID and instanceUID for the copy.

VTK doesn't support copy constructors, so this is a method.

Parameters

headerCopy header object to copy current object into.

Method that copies a DICOM heder to the input (headerCopy). New instance UIDs are generated for SeriesInstanceUID, SOPInstanceUID, MediaStorageSOPInstanceUID. StudyInstanceuUID is preserved.

References svkDcmHeader::CopyDcmHeader(), svkDcmHeader::GenerateUniqueUID(), svkDcmHeader::InsertUniqueUID(), svkDcmHeader::SetSliceOrder(), and svkDcmHeader::SetValue().

Referenced by svkImageAlgorithmExecuter::RequestData(), svkDICOMEnhancedMRIWriter::Write(), and svkDICOMMRSWriter::Write().

void MakeDerivedDcmHeader ( string seriesDescription = "" )

Inplace version.

Method that updates the current DICOM heder. New instance UIDs are generated for SeriesInstanceUID, SOPInstanceUID, MediaStorageSOPInstanceUID. StudyInstanceuUID is preserved.

References svkDcmHeader::GenerateUniqueUID(), svkDcmHeader::InsertUniqueUID(), svkDcmHeader::SetSliceOrder(), and svkDcmHeader::SetValue().

virtual void ModifyValueRecursive	(	const char *	name,
		string	value
	)

pure virtual

Implemented in svkDcmtkAdapter.

Referenced by svkDcmHeader::Deidentify().

virtual void PrintDcmHeader ( )

pure virtual

Implemented in svkDcmtkAdapter.

Referenced by svkPhilipsSReader::ExecuteDataWithInformation(), svkVarianFidReader::ExecuteDataWithInformation(), svkFdfVolumeReader::ExecuteDataWithInformation(), svkSiemensRdaReader::ExecuteDataWithInformation(), svkDcmSegmentationVolumeReader::ExecuteInformation(), svkDdfVolumeReader::ExecuteInformation(), svkGEPostageStampReader::InitDcmHeader(), svkDcmMriVolumeReader::InitDcmHeader(), svkBrukerDCMMRSReader::InitDcmHeader(), and svkGEPFileMapper::RedimensionModifiedSVData().

virtual void PrintDcmHeader ( ostream & os )

pure virtual

Implemented in svkDcmtkAdapter.

void PrintDimensionIndexVector ( svkDcmHeader::DimensionVector * dimensionVector )

static

References svkDcmHeader::DimensionIndexLabelToString(), and svkDcmHeader::GetDimensionVectorValue().

Referenced by svkDcmVolumeReader::ExecuteInformation(), svkMrsImageFlip::RequestData(), svkDcmHeader::SetDimensionIndexSize(), and svkDcmHeader::SwapDimensionIndexLabels().

virtual int ReadDcmFile	(	string	fileName,
		unsigned int	max_length = `0`
	)

pure virtual

Read the DICOM file of the specified file name

Parameters

fileName name of the output file root (no extension).

Returns 0 for success, 1 for failure.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmRawDataReader::CanReadFile(), svkDcmMrsVolumeReader::CanReadFile(), svkGEPostageStampReader::CanReadFile(), svkBrukerDCMMRSReader::CanReadFile(), svkDcmRawDataReader::ExtractFiles(), svkGEPostageStampReader::InitDcmHeader(), svkDcmMriVolumeReader::InitDcmHeader(), svkBrukerDCMMRSReader::InitDcmHeader(), and svkDcmVolumeReader::InitDcmHeader().

virtual int ReadDcmFileHeaderOnly ( string fileName )

pure virtual

Read only the DICOM header of the specified file name, not the data

Parameters

fileName name of the output file root (no extension).

Returns 0 for success, 1 for failure.

Implemented in svkDcmtkAdapter.

Referenced by svkDcmSegmentationVolumeReader::CanReadFile(), svkDcmMriVolumeReader::CanReadFile(), svkDcmEnhancedVolumeReader::CanReadFile(), svkDcmVolumeReader::InitFileNames(), and svkDcmVolumeReader::InitSliceOrder().

void Redimension ( svkDcmHeader::DimensionVector * newDimensionVector )

Resets the Frame content and image position patient based on the new dimensionality in the dimensionVector.

References svkDcmHeader::GetCenterFromOrigin(), svkDcmHeader::GetDataDcos(), svkDcmHeader::GetOriginFromCenter(), svkDcmHeader::GetPixelSpacing(), svkDcmHeader::GetSpatialDimensions(), svkDcmHeader::InitMultiFrameDimensionModule(), svkDcmHeader::InitPerFrameFunctionalGroupSequence(), and svkDcmHeader::SetValue().

Referenced by svkDcmHeader::AddDimensionIndex(), svkDcmVolumeReader::ExecuteInformation(), svkMrsImageData::Redimension(), svkDcmHeader::Redimension(), svkDcmHeader::RemoveDimensionIndex(), svkDcmHeader::SetDimensionIndexSize(), and svkMRSAutoPhase::SVKRequestDataPreExec().

void Redimension	(	svkDcmHeader::DimensionVector *	dimensionVector,
		double *	newToplcOrigin,
		double *	newPixelSpacing
	)

Calls the Redimension method and then sets the origin and pixel spacing.

References svkDcmHeader::GetDataDcos(), svkDcmHeader::InitPerFrameFunctionalGroupSequence(), and svkDcmHeader::Redimension().

void RemoveDimensionIndex ( svkDcmHeader::DimensionIndexLabel indexType )

Remove a dimension from Dimension Index Sequence, and reset the header to the new dimension. This is typically not a spatial dimension so the origin/toplc do not change

References svkDcmHeader::DimensionIndexLabelToString(), svkDcmHeader::GetDimensionIndexPosition(), svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::IsDimensionDefined(), and svkDcmHeader::Redimension().

Referenced by svkEPSIReorder::CombineLobes().

virtual void RemoveElement ( const char * elementName )

pure virtual

Method to remove itm from dataset

Implemented in svkDcmtkAdapter.

Referenced by svkMrsImageFFT::RequestDataSpatial().

virtual void ReplaceOldElements ( bool replaceElements )

pure virtual

determines whether insert new element statements replace existing values or not.

Implemented in svkDcmtkAdapter.

Referenced by svkIOD::SetReplaceOldElements().

void SetDcmPatientName ( string PatientName )

Converts a string representation of a patient name to a DICOM VR = PN representation and sets the value in the DICOM header: "[lastName[^firstName[^middleName[^namePrefix[^nameSuffix]]]]"

Parameters

PatientName space delimited patient name string

References svkDcmHeader::GetDcmPatientName(), and svkDcmHeader::SetValue().

Referenced by svkGESigna5XReader::InitPatientModule().

void SetDimensionIndexSize	(	svkDcmHeader::DimensionIndexLabel	indexType,
		int	maxIndex
	)

resets a dimension size for existing dimension

References svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::PrintDimensionIndexVector(), svkDcmHeader::Redimension(), and svkDcmHeader::SetDimensionVectorValue().

Referenced by svkGEPFileMapperUCSFfidcsiDev0::ReadData(), and svkGEPFileMapper::ReorderEPSI().

void SetDimensionIndices	(	unsigned int *	indexValues,
		int	numFrameIndices,
		int	sliceNum,
		int	timePt,
		int	coilNum,
		int	numTimePts,
		int	numCoils
	)

static

Get the Dimension Index Values for a set of indices

void SetDimensionVectorValue	(	svkDcmHeader::DimensionVector *	dimensionVector,
		int	index,
		int	value
	)

static

Set the value of the specified dimension.

Referenced by svkEPSIReorder::CombineLobes(), svkLCModelTableReader::ExecuteDataWithInformation(), svkVoxelTaggingUtils::FixPerFrameFunctionalGroupSequence(), svkDcmHeader::GetDimensionVectorIndexFromCellID(), svkDcmHeader::GetDimensionVectorIndexFromFrame(), svk4DImageData::GetImage(), svkDcmHeader::InitDerivedMRIHeader(), svkVarianUCSF2DcsiMapper::InitPerFrameFunctionalGroupMacros(), svkVarianUCSFEPSI2DMapper::InitPerFrameFunctionalGroupMacros(), svkPhilipsSMapper::InitPerFrameFunctionalGroupMacros(), svkVarianFidMapper::InitPerFrameFunctionalGroupMacros(), svkVarianCSFidMapper::InitPerFrameFunctionalGroupMacros(), svkGEPFileMapper::InitPerFrameFunctionalGroupMacros(), svkGESigna5XReader::InitPerFrameFunctionalGroupMacros(), svkVarianUCSFEPSI2DMapper::RedimensionData(), svkGEPFileMapper::RedimensionModifiedSVData(), svkGEPFileMapper::ReorderEPSI(), svkMrsImageFlip::RequestData(), svkMrsSingleVoxelSincExtraction::RequestData(), svkMriZeroFill::RequestData(), svkMRSKinetics::RequestData(), svkMrsImageFFT::RequestDataSpatial(), svkMrsZeroFill::RequestDataSpatial(), svkDcmHeader::SetDimensionIndexSize(), and svk4DImageData::SetImage().

void SetDimensionVectorValue	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionIndexLabel	indexType,
		int	value
	)

static

Set the value of the specified dimension.

void SetPixelDataType ( DcmPixelDataFormat dataType )

Set the format that specifies the word size and representation in the DICOM PixelData. Note that this represents the in-memory pixel representation and supports 8, 16 and 32 bit char, int and float representations. When writing to DICOM MRI only 8 and 16 bit ints are supported, so data may require scaling (see DICOM RescaleIntercept and RescaleSlope attributes).

References svkDcmHeader::SetValue(), svkDcmHeader::SIGNED_FLOAT_4, svkDcmHeader::SIGNED_FLOAT_8, svkDcmHeader::SIGNED_INT_2, svkDcmHeader::UNSIGNED_INT_1, and svkDcmHeader::UNSIGNED_INT_2.

Referenced by svkImageData::CastDataFormat(), svkImageData::CopyAndFillComponents(), svkVoxelTaggingUtils::CreateVoxelTagData(), svkFdfVolumeReader::ExecuteDataWithInformation(), svkDcmHeader::InitImagePixelModule(), svkDICOMEnhancedMRIWriter::InitPixelData(), svkDICOMMRIWriter::InitPixelData(), svkImageThreshold::RequestData(), and svkImageReader2::SetupOutputScalarData().

void SetSliceOrder ( DcmDataOrderingDirection sliceOrderVal )

Sets the slice order value so that the sense of the normal to the orientation plane can be calculated correctly.

Referenced by svkSdbmVolumeReader::ExecuteDataWithInformation(), svkGESigna5XReader::ExecuteInformation(), svkDcmHeader::InitDerivedMRIHeader(), svkVarianUCSF2DcsiMapper::InitPerFrameFunctionalGroupMacros(), svkVarianUCSFEPSI2DMapper::InitPerFrameFunctionalGroupMacros(), svkPhilipsSMapper::InitPerFrameFunctionalGroupMacros(), svkVarianFidMapper::InitPerFrameFunctionalGroupMacros(), svkVarianCSFidMapper::InitPerFrameFunctionalGroupMacros(), svkGEPFileMapper::InitPlaneOrientationMacro(), svkDcmHeader::InitPlaneOrientationMacro(), svkDcmVolumeReader::InitSliceOrder(), and svkDcmHeader::MakeDerivedDcmHeader().

virtual void SetSOPClassUID ( DcmIodType iodType )

pure virtual

Implemented in svkDcmtkAdapter.

Referenced by svkDcmSegmentationVolumeReader::ExecuteInformation(), svkRawIOD::InitSOPCommonModule(), svkEnhancedMRIIOD::InitSOPCommonModule(), svkMRIIOD::InitSOPCommonModule(), svkMRSIOD::InitSOPCommonModule(), and svkSCIOD::InitSOPCommonModule().

virtual void SetValue	(	const char *	name,
		int	value
	)

pure virtual

Method to set a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		float	value
	)

pure virtual

Method to set a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		double	value
	)

pure virtual

Method to set a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		string	value,
		bool	setMetaInfo = `false`
	)

pure virtual

Method to set a DICOM tag by specifying it's name and value. The name should be the string representation of the field in the DICOM dictionary being used.

Parameters

setMetaInfo,set dataset or metaInfo if true.

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		unsigned char *	values,
		int	numValues
	)

pure virtual

Sets the array of value for a given tag.

Parameters

name	the name of the tag whose value you wish to set
values	the pointer to the array of values you wish the tag to have
numValues	the number of elements in the array of values

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		unsigned short *	values,
		int	numValues
	)

pure virtual

Sets the array of value for a given tag.

Parameters

name	the name of the tag whose value you wish to set
values	the pointer to the array of values you wish the tag to have
numValues	the number of elements in the array of values

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		signed short *	values,
		int	numValues
	)

pure virtual

Sets the array of value for a given tag.

Parameters

name	the name of the tag whose value you wish to set
values	the pointer to the array of values you wish the tag to have
numValues	the number of elements in the array of values

Implemented in svkDcmtkAdapter.

virtual void SetValue	(	const char *	name,
		float *	values,
		int	numValues
	)

pure virtual

Sets the array of value for a given tag.

Parameters

name	the name of the tag whose value you wish to set
values	the pointer to the array of values you wish the tag to have
numValues	the number of elements in the array of values

Implemented in svkDcmtkAdapter.

svkDcmHeader::DimensionIndexLabel StringToDimensionIndexLabel ( string dimensionIndexLabelString )

static

Convert between stirng and svkDcmHeader::DimensionIndexLabel These are the string representations of the DICOM DimensionIndexLabel attribute.

References svkDcmHeader::CHANNEL_INDEX, svkDcmHeader::EPSI_ACQ_INDEX, svkDcmHeader::SLICE_INDEX, and svkDcmHeader::TIME_INDEX.

void SwapDimensionIndexLabels	(	svkDcmHeader::DimensionVector *	dimensionVector,
		svkDcmHeader::DimensionIndexLabel	label1,
		svkDcmHeader::DimensionIndexLabel	label2
	)

static

Swaps the specified dimension index labels

References svkDcmHeader::GetDimensionVectorValue(), and svkDcmHeader::PrintDimensionIndexVector().

void UpdateNumCoils ( )

References svkDcmHeader::CHANNEL_INDEX, svkDcmHeader::GetDimensionIndexVector(), and svkDcmHeader::GetDimensionVectorValue().

void UpdateNumTimePoints ( )

References svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::GetDimensionVectorValue(), and svkDcmHeader::TIME_INDEX.

vtkTypeMacro	(	svkDcmHeader	,
		vtkObject
	)

bool WasModified ( )

protected

Referenced by svkDcmHeader::GetDimensionIndexVector(), svkDcmHeader::GetNumberOfCoils(), svkDcmHeader::GetNumberOfTimePoints(), svkDcmHeader::GetOrientation(), svkDcmHeader::GetOrigin(), svkDcmHeader::GetPixelSize(), and svkDcmHeader::GetPixelSpacing().

virtual void WriteDcmFile ( string fileName )

pure virtual

Writes the DICOM file to the specified file name

Parameters

fileName name of the output file root (no extension).

Implemented in svkDcmtkAdapter.

Referenced by svkDICOMEnhancedMRIWriter::Write(), svkDICOMMRSWriter::Write(), and svkDICOMRawDataWriter::Write().

virtual void WriteDcmFileCompressed ( string fileName )

pure virtual

Writes the DICOM file to the specified file name and using RLE lossless compression transfer syntax

Parameters

fileName name of the output file root (no extension).

Implemented in svkDcmtkAdapter.

Member Data Documentation

const string UNKNOWN_STRING = "UNKNOWN"

static

const float UNKNOWN_TIME = -1

static

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Detailed Description

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation