svkMRSKinetics Class Reference

#include <svkMRSKinetics.h>

Inheritance diagram for svkMRSKinetics:

Public Types
enum	MODEL_TYPE {   UNDEFINED = 0, FIRST_MODEL = 1, TWO_SITE_EXCHANGE = FIRST_MODEL, TWO_SITE_EXCHANGE_PERF,   TWO_SITE_IM, TWO_SITE_IM_PYR, LAST_MODEL = TWO_SITE_IM_PYR }

Public Member Functions
	vtkTypeMacro (svkMRSKinetics, svkImageAlgorithm)
void	SetSeriesDescription (vtkstd::string newSeriesDescription)
void	SetOutputDataType (svkDcmHeader::DcmPixelDataFormat dataType)
void	SetZeroCopy (bool zeroCopy)
void	SetModelType (svkMRSKinetics::MODEL_TYPE modelType)
void	SetTR (float TR)
float	GetTR ()
int	GetNumberOfModelOutputPorts ()
int	GetNumberOfModelSignals ()
string	GetModelOutputDescription (int outputIndex)
Public Member Functions inherited from svkImageAlgorithm
	vtkTypeMacro (svkImageAlgorithm, vtkImageAlgorithm)
svkImageData *	GetOutput ()
svkImageData *	GetOutput (int port)
svkImageData *	GetImageDataInput (int port)

Static Public Member Functions
static svkMRSKinetics *	New ()

Protected Member Functions
	svkMRSKinetics ()
	~svkMRSKinetics ()
virtual int	RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
virtual int	RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
void	ZeroData ()
void	SyncPointsFromCells ()
virtual int	FillInputPortInformation (int vtkNotUsed(port), vtkInformation *info)
virtual int	FillOutputPortInformation (int vtkNotUsed(port), vtkInformation *info)
virtual void	UpdateProvenance ()
Protected Member Functions inherited from svkImageAlgorithm
	svkImageAlgorithm ()
	~svkImageAlgorithm ()

Protected Attributes
vtkstd::string	newSeriesDescription

Detailed Description

Kinetic fitting Christine Leon Swisher, PhD Cornelius Von Morze, PhD Jason C. Crane, PhD

Member Enumeration Documentation

enum MODEL_TYPE

Enumerator
UNDEFINED
FIRST_MODEL
TWO_SITE_EXCHANGE
TWO_SITE_EXCHANGE_PERF
TWO_SITE_IM
TWO_SITE_IM_PYR
LAST_MODEL

Constructor & Destructor Documentation

svkMRSKinetics ( )

protected

References svkMRSKinetics::newSeriesDescription, and svkMRSKinetics::UNDEFINED.

~svkMRSKinetics ( )

protected

Member Function Documentation

int FillInputPortInformation ( int   vtkNotUsedport, vtkInformation *  info  )

protectedvirtual

input ports 0 - 2 are required. All input ports are MRI data. 0: pyruvate signal vs time 1: lactate signal vs time 2: urea signal vs time 3: spatial mask ROI (optional)

Reimplemented from svkImageAlgorithm.

References svkMRSKinetics::GetNumberOfModelSignals().

int FillOutputPortInformation ( int   vtkNotUsedport, vtkInformation *  info  )

protectedvirtual

Output from this algo is an svkMriImageData object.

Reimplemented from svkImageAlgorithm.

string GetModelOutputDescription

(

int

outputIndex

)

int GetNumberOfModelOutputPorts

(

)

Get the number of otuput ports for the const function

Referenced by svkMRSKinetics::SetModelType().

int GetNumberOfModelSignals

(

)

Get the number of signals required for the specified cost function

Referenced by svkMRSKinetics::FillInputPortInformation(), svkMRSKinetics::RequestData(), svkMRSKinetics::SetModelType(), svkMRSKinetics::SyncPointsFromCells(), and svkMRSKinetics::ZeroData().

float GetTR

(

)

Get the TR for the experiment (in seconds). This is the time between kinetic samples and is used to scale the and params

static svkMRSKinetics* New ( )

static

int RequestData ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

protectedvirtual

Copy the Dcm Header and Provenance from the input to the output.

References svkImageData::DeepCopy(), svk4DImageData::GetArray(), svkMriImageData::GetCellDataRepresentation(), svkImageData::GetDcmHeader(), svkDcmHeader::GetDimensionIndexVector(), svkImageAlgorithm::GetImageDataInput(), svkMRSKinetics::GetNumberOfModelSignals(), svkDcmHeader::GetNumberOfTimePoints(), svkImageData::GetNumberOfVoxels(), svkImageAlgorithm::GetOutput(), svkDcmHeader::InsertUniqueUID(), svkMRSKinetics::newSeriesDescription, svkDcmHeader::SetDimensionVectorValue(), and svkDcmHeader::SetValue().

int RequestInformation ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

protectedvirtual

Resets the origin and extent for correct initialization of output svkMriImageData object from input svkMrsImageData object.

References svkImageData::GetDcmHeader(), svkImageAlgorithm::GetImageDataInput(), and svkDcmHeader::GetOrigin().

void SetModelType

(

svkMRSKinetics::MODEL_TYPE

modelType

)

Set model

References svkMRSKinetics::GetNumberOfModelOutputPorts(), svkMRSKinetics::GetNumberOfModelSignals(), and svkMRSKinetics::LAST_MODEL.

void SetOutputDataType

(

svkDcmHeader::DcmPixelDataFormat

dataType

)

void SetSeriesDescription

(

vtkstd::string

newSeriesDescription

)

Set the series description for the DICOM header of the copy.

References svkMRSKinetics::newSeriesDescription.

void SetTR

(

float

TR

)

Set the TR for the experiment (in seconds). This is the time between kinetic samples and is used to scale the and params

void SetZeroCopy

(

bool

zeroCopy

)

void SyncPointsFromCells ( )

protected

Sync Point Data from Cell Data

References svkMRSKinetics::GetNumberOfModelSignals(), svkImageData::GetNumberOfVoxels(), and svkImageAlgorithm::GetOutput().

void UpdateProvenance ( )

protectedvirtual

vtkTypeMacro	(	svkMRSKinetics	,
		svkImageAlgorithm
	)

void ZeroData ( )

protected

Zero data

References svkMRSKinetics::GetNumberOfModelSignals(), svkImageData::GetNumberOfVoxels(), and svkImageAlgorithm::GetOutput().

Member Data Documentation

vtkstd::string newSeriesDescription

protected

Referenced by svkMRSKinetics::RequestData(), svkMRSKinetics::SetSeriesDescription(), and svkMRSKinetics::svkMRSKinetics().

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The documentation for this class was generated from the following files:

• svkMRSKinetics.h
• svkMRSKinetics.cc