#include <svkBrukerDCMMRSReader.h>

Inheritance diagram for svkBrukerDCMMRSReader:

Public Member Functions
	vtkTypeMacro (svkBrukerDCMMRSReader, svkDcmVolumeReader)

virtual const char *	GetDescriptiveName ()

virtual svkImageReader2::ReaderType	GetReaderType ()

virtual int	CanReadFile (const char *fname)

Public Member Functions inherited from svkDcmVolumeReader
	vtkTypeMacro (svkDcmVolumeReader, svkImageReader2)

Public Member Functions inherited from svkImageReader2
	vtkTypeMacro (svkImageReader2, vtkImageReader2)

svkImageData *	GetOutput ()

svkImageData *	GetOutput (int)

svkDcmHeader *	GetDcmHeader (const char *fileName)

void	OnlyReadOneInputFile ()

void	OnlyGlobFiles ()

void	GlobFileNames ()

void	OnlyReadHeader (bool onlyReadHeader)

Static Public Member Functions
static svkBrukerDCMMRSReader *	New ()

Static Public Member Functions inherited from svkDcmVolumeReader
static float	GetFloatValAttribute7 (vector< string > vec)

static int	GetIntValAttribute8 (vector< string > vec)

static void	GetVOILUTScaledPixels (float floatPixels, unsigned short shortPixels, float center, float window, int numberOfPixels)

Static Public Member Functions inherited from svkImageReader2
static string	StripWhite (string in)

static string	RemoveDelimFromDate (string *slashDate, char delimChar= '/')

static string	GetFileRoot (const char *fname)

static string	GetFileExtension (const char *fname)

static string	GetFilePath (const char *fname)

static string	GetFileNameWithoutPath (const char *fname)

static long	GetFileSize (ifstream *fs)

Protected Member Functions
	svkBrukerDCMMRSReader ()

	~svkBrukerDCMMRSReader ()

virtual int	FillOutputPortInformation (int port, vtkInformation *info)

virtual svkDcmHeader::DcmPixelDataFormat	GetFileType ()

virtual void	InitDcmHeader ()

virtual bool	CheckForMultiVolume ()

virtual void	CleanAttributes (set< string > *uniqueSlices)

Protected Member Functions inherited from svkDcmVolumeReader
	svkDcmVolumeReader ()

	~svkDcmVolumeReader ()

virtual void	ExecuteInformation ()

virtual void	ExecuteDataWithInformation (vtkDataObject output, vtkInformation outInfo)

ProprietarySOP	ContainsProprietaryContent (svkImageData *data)

void	InitFileNames ()

void	OnlyReadInputFile ()

void	SortFilesByImagePositionPatient (vector< vector< string > > &dcmSeriesAttributes, bool ascending)

void	SortFilesByInstanceNumber (vector< vector< string > > &dcmSeriesAttributes, int numSlicesPerVol, bool ascending)

void	InitSliceOrder ()

void	InitSliceOrder (string hfileStart, string fileEnd)

float	GetSliceSpacing ()

Protected Member Functions inherited from svkImageReader2
	svkImageReader2 ()

	~svkImageReader2 ()

void	SetupOutputInformation ()

void	SetupOutputExtent ()

void	SetupOutputScalarData ()

virtual void	ReadLine (ifstream hdr, istringstream iss)

void	ReadLineIgnore (ifstream hdr, istringstream iss, char delim)

string	ReadLineSubstr (ifstream hdr, istringstream iss, int start, int stop)

string	ReadLineValue (ifstream hdr, istringstream iss, char delim)

int	ReadLineKeyValue (ifstream hdr, istringstream iss, char delim, string key, string value)

virtual void	SetProvenance ()

virtual string	GetFileSeriesDescription (string fileName)

void	SetReadLength (int length)

Additional Inherited Members
Public Types inherited from svkImageReader2
enum	ReaderType { UNDEFINED = -1, DICOM_MRS =0, DICOM_MRI, DICOM_ENHANCED_MRI, DICOM_SEGMENTATION, DICOM_RAW, SIEMENS_RDA, VARIAN_FID, VARIAN_FDF, GE_PFILE, GE_SDBM, GE_POSTAGE_STAMP, GE_SIGNA_LX2, GE_SIGNA_5X, LC_MODEL_COORD, LC_MODEL_CSV, LC_MODEL_TABLE, VARIABLE_FLIP_DAT, BRUKER_MRS, PHILIPS_S, DDF, IDF, LAST_TYPE = IDF }

Protected Types inherited from svkDcmVolumeReader
enum	ProprietarySOP { DICOM_STD_SOP = 0, GE_POSTAGE_STAMP_SOP, BRUKER_MRS_SOP }

Protected Attributes inherited from svkDcmVolumeReader
int	numFrames

svkDcmHeader::DcmDataOrderingDirection	dataSliceOrder

int	numVolumes

Protected Attributes inherited from svkImageReader2
vtkDataArray *	dataArray

bool	readOneInputFile

bool	onlyGlobFiles

bool	onlyReadHeader

Detailed Description

Reader for Bruker DICOM MRS data. Bruker encodes MRS data in a DICOM MR Image Storage SOP instance. If the MRI SOP Manufacturer is Bruker and the SequenceName contains CSI, then this custom DICOM reader is used to map the data to an MRS object. Currently this reader expects only 2D CSI data.

Thanks to Yanurita Dwihapsari, Timothy Stait-Gardner, PhD and William S. Price, DSc. of University of Western Sydney for providing sample Bruker data and helpful discussions.