#include <svkPlotGridView.h>

Inheritance diagram for svkPlotGridView:

Public Types
enum	ActorType { VOL_SELECTION = 0, OVERLAY_IMAGE, OVERLAY_TEXT, PLOT_GRID, PLOT_LINES, DETAILED_PLOT, RULER, SAT_BANDS, SAT_BANDS_OUTLINE, LAST_PROP = SAT_BANDS_OUTLINE }
	Enum represents objects in the scene. More...

enum	RendererType { PRIMARY = 0, LAST_RENDERER = PRIMARY }
	Enum represents renderers in the window. More...

enum	ColorSchema { LIGHT_ON_DARK = 0, DARK_ON_LIGHT }
	Enum represents different color schemes. Used for printing. More...

enum	DataInputs { MR4D, MET, ADDITIONAL_MR4D }
	Enum represent the data inputs. More...

enum	WindowLevelRanges { FREQUENCY = 0, AMPLITUDE }
	Enum represents different color schemes. Used for printing. More...

Public Member Functions
	vtkTypeMacro (svkPlotGridView, svkDataView)

	svkPlotGridView ()
	Constructor. More...

	~svkPlotGridView ()
	Destructor. More...

virtual void	SetInput (svkImageData *data, int index)

virtual void	AddReferenceInput (svkImageData *data)

virtual void	RemoveInput (int index)

virtual void	SetSlice (int slice)

virtual void	SetTlcBrc (int tlcBrc[2])

virtual void	SetTlcBrc (int tlcID, int brcID)

virtual void	SetWindowLevelRange (double lower, double upper, int index)

virtual void	GetWindowLevelRange (double &lower, double &upper, int index)

virtual void	SetOverlayWLRange (double *range)

virtual double *	GetOverlayWLRange ()

void	SetComponent (svkPlotLine::PlotComponent component, int plotIndex=-1)

void	SetActiveComponent (svkPlotLine::PlotComponent component)

svkPlotLine::PlotComponent	GetActiveComponent ()

virtual void	SetVolumeIndex (int index, int volumeIndex=0, int plotIndex=-1)

virtual int	GetVolumeIndex (int volumeIndex=0)

virtual int *	GetVolumeIndexArray ()

void	SetPlotUnits (svkSpecPoint::UnitType plotUnitType)

virtual void	SetRWInteractor (vtkRenderWindowInteractor *rwi)

virtual void	SetPlotColor (int plotIndex, double *rgb)

virtual double *	GetPlotColor (int plotIndex)

virtual void	SetPlotLineWidth (float width)

virtual void	SetPlotVisibility (int plotIndex, bool visible)

virtual bool	GetPlotVisibility (int plotIndex)

virtual int	GetNumberOfReferencePlots ()

virtual void	SetActivePlotIndex (int plotIndex)

virtual svkImageData *	GetActivePlot ()

virtual int	GetActivePlotIndex ()

virtual void	Refresh ()
	Method is called when data object is Modified. More...

void	GeneratePlotGridActor ()

void	GenerateClippingPlanes ()

virtual void	SetOrientation (svkDcmHeader::Orientation orientation)

virtual void	AlignCamera ()
	Resets the camera to look at the new selection. More...

svk4DImageData *	GetActiveInput ()

void	SetOverlayTextDigits (int digits)

string	GetScientificFormat (int digits)

string	GetDecimalFormat (int digits)

void	TurnPropOn (int propIndex)

void	TurnPropOff (int propIndex)

void	HideView ()

void	ShowView ()

void	AlignCameraOff ()

void	AlignCameraOn ()

void	SetActiveOverlayVolume (int volume)

void	SetOverlayThreshold (double threshold)

Public Member Functions inherited from svkDataView
	vtkTypeMacro (svkDataView, vtkObject)

	svkDataView ()
	Constructor. More...

	~svkDataView ()
	Destructor. More...

virtual svkImageData *	GetInput (int index=0)

virtual void	SetController (svkDataViewController *controller)

virtual svkDataViewController *	GetController ()

virtual int	GetSlice ()

virtual void	SetPropState (int propIndex, bool visible)

virtual bool	IsPropOn (int propIndex)

virtual void	SetRendererState (int rendererIndex, bool visible)

virtual void	TurnRendererOn (int rendererIndex)

virtual void	TurnRendererOff (int rendererIndex)

virtual bool	IsRendererOn (int rendererIndex)

virtual void	SetVisibility (int actorIndex, bool visible)
	Is it in the views current displayed FOV? More...

virtual vtkRenderer *	GetRenderer (int index)

virtual void	SetRenderer (int index, vtkRenderer *ren)

virtual vtkProp *	GetProp (int index)

virtual void	SetProp (int index, vtkProp *prop)

virtual svkDcmHeader::Orientation	GetOrientation ()

void	ValidationOff ()

Static Public Member Functions
static svkPlotGridView *	New ()

Static Public Member Functions inherited from svkDataView
static void	ClipMapperToTlcBrc (svkImageData data, vtkAbstractMapper mapper, int tlcBrc[2], double clip_tolerance_row, double clip_tolerance_column, double clip_tolerance_slice)

static void	GetClippingIndexFromTlcBrc (svkImageData *data, int indexRange[2][3], int tlcBrc[2])

static void	GetClippingPlanes (vtkPlaneCollection planes, svkImageData data, int *tlcBrc, double clip_tolerance_row, double clip_tolerance_column, double clip_tolerance_slice)

static bool	IsTlcBrcWithinData (svkImageData *data, int tlcBrc[2])

static bool	IsTlcBrcWithinData (svkImageData *data, int tlcID, int brcID)

static void	ResetTlcBrcForNewOrientation (svkImageData *data, svkDcmHeader::Orientation orientation, int tlcBrc[2], int &slice)

Protected Member Functions
void	CreateMetaboliteOverlay (svkImageData *data)

void	UpdateMetaboliteText (int *tlcBrc)

void	UpdateMetaboliteImage (int *tlcBrc)

void	UpdateMetaboliteTextDisplacement ()

void	UpdateDetailedPlot (int *tlcBrc)

void	UpdateDetailedPlotOverlay (int tlc)

void	SetSelection (double *selectionArea, bool isWorldCords=0)

int *	HighlightSelectionVoxels ()

void	SetColorSchema (int colorSchema)

string	GetDataCompatibility (svkImageData *data, int targetIndex)

void	SetOverlayOpacity (double opacity)

void	SetLUT (svkLookupTable::svkLookupTableType type)

Protected Member Functions inherited from svkDataView
virtual void	UpdateProps ()

void	ObserveData (svkImageData *data)

Protected Attributes
vector< svkPlotLineGrid * >	plotGrids

vector< svkImageClip * >	metClippers

vector< vtkActor2D * >	overlayTextActors

double	referencePlotColors [10][3]

Protected Attributes inherited from svkDataView
vector< vtkRenderer * >	renCollection

vector< vtkProp * >	propCollection

vtkRenderWindowInteractor *	rwi

vector< svkImageData * >	dataVector

svkDataViewController *	controller

vtkCallbackCommand *	dataModifiedCallback

svkDcmHeader::Orientation	orientation

int	tlcBrc [2]
	the top left, bottom right corners of the current view More...

int	slice

vector< bool >	isPropOn

vector< bool >	isRendererOn

vector< bool >	isPropVisible

bool	isValidationOn

Friends
class	svkPlotGridViewController

Additional Inherited Members
Static Protected Member Functions inherited from svkDataView
static void	UpdateView (vtkObject subject, unsigned long eid, void thisObject, void *callData)

Detailed Description

A concrete implementation of svkDataView. Its puropose is to visualize 4D data plots in a rectangular grid.

Member Enumeration Documentation

enum ActorType

Enum represents objects in the scene.

Enumerator
VOL_SELECTION
OVERLAY_IMAGE
OVERLAY_TEXT
PLOT_GRID
PLOT_LINES
DETAILED_PLOT
RULER
SAT_BANDS
SAT_BANDS_OUTLINE
LAST_PROP

enum ColorSchema

Enum represents different color schemes. Used for printing.

Enumerator
LIGHT_ON_DARK
DARK_ON_LIGHT

enum DataInputs

Enum represent the data inputs.

Enumerator
MR4D
MET
ADDITIONAL_MR4D

enum RendererType

Enum represents renderers in the window.

Enumerator
PRIMARY
LAST_RENDERER

enum WindowLevelRanges

Enum represents different color schemes. Used for printing.

Enumerator
FREQUENCY
AMPLITUDE

Constructor & Destructor Documentation

svkPlotGridView ( )

Constructor.

References svkDcmHeader::AXIAL, svkDataView::dataVector, svkPlotGridView::DETAILED_PLOT, svkDetailedPlotDirector::GetPlotActor(), svkDetailedPlotDirector::GetRuler(), svkSatBandSet::GetSatBandsActor(), svkSatBandSet::GetSatBandsOutlineActor(), svkDataView::isPropOn, svkDataView::isPropVisible, svkDataView::isRendererOn, svkPlotGridView::LAST_PROP, svkPlotGridView::LAST_RENDERER, svkImageMapToColors::New(), svkSatBandSet::New(), svkImageActor::New(), svkPlotLineGrid::New(), svkDetailedPlotDirector::New(), svkDataView::orientation, svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::PLOT_GRID, svkPlotGridView::PLOT_LINES, svkPlotGridView::plotGrids, svkDataView::propCollection, svkSpecPoint::PTS, svkPlotGridView::referencePlotColors, svkDataView::renCollection, svkPlotGridView::RULER, svkDataView::rwi, svkPlotGridView::SAT_BANDS, svkPlotGridView::SAT_BANDS_OUTLINE, svkSatBandSet::SetOrientation(), svkDataView::SetProp(), svkDataView::slice, svkDataView::tlcBrc, svkPlotGridView::TurnPropOff(), svkPlotGridView::TurnPropOn(), and svkPlotGridView::VOL_SELECTION.

~svkPlotGridView ( )

Destructor.

References svkPlotGridView::metClippers, svkPlotGridView::plotGrids, and svkDataView::rwi.

Member Function Documentation

void AddReferenceInput ( svkImageData * data )

virtual

References svkPlotGridView::ADDITIONAL_MR4D, svkPlotGridView::plotGrids, and svkPlotGridView::SetInput().

void AlignCamera ( )

virtual

Resets the camera to look at the new selection.

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::dataVector, svkDataView::GetProp(), svkDataView::GetRenderer(), svkPlotGridView::MR4D, svkDataView::orientation, svkPlotGridView::plotGrids, svkPlotGridView::PRIMARY, svkDcmHeader::SAGITTAL, svkDataView::slice, svkDataView::tlcBrc, and svkPlotGridView::VOL_SELECTION.

Referenced by svkPlotGridView::CreateMetaboliteOverlay(), svkPlotGridView::SetInput(), svkPlotGridView::SetOrientation(), svkPlotGridView::SetSlice(), and svkPlotGridView::SetTlcBrc().

void AlignCameraOff ( )

Turn off this behavior to prevent auto alignment of camera during slice changes, etc.

void AlignCameraOn ( )

Turn on (on by default) this behavior to prevent auto alignment of camera during slice changes, etc.

void CreateMetaboliteOverlay ( svkImageData * data )

protected

Creates the svkOrientedImageActor for rendering an overlay.

Parameters

data	the data to be rendered as an overlay

TODO: Implement changes for multiple overlays

References svkPlotGridView::AlignCamera(), svkLookupTable::COLOR, svkDataView::dataVector, svkLabeledDataMapper::GetLabelTextProperty(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkVoxelTaggingUtils::IsImageVoxelTagData(), svkDataView::IsPropOn(), svkPlotGridView::MET, svkPlotGridView::metClippers, svkPlotGridView::MR4D, svkImageClip::New(), svkImageMapToColors::New(), svkLookupTable::New(), svkLabeledDataMapper::New(), svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::PRIMARY, svkPlotGridView::Refresh(), svkLookupTable::SetAlphaThreshold(), svkLabeledDataMapper::SetLabelModeToLabelScalars(), svkLookupTable::SetLUTType(), svkPlotGridView::SetOverlayOpacity(), svkPlotGridView::SetOverlayTextDigits(), svkDataView::tlcBrc, svkPlotGridView::TurnPropOff(), svkPlotGridView::TurnPropOn(), svkPlotGridView::UpdateMetaboliteText(), and svkPlotGridView::UpdateMetaboliteTextDisplacement().

Referenced by svkPlotGridView::SetInput().

void GenerateClippingPlanes ( )

Generates the clipping planes for the mMMapper. This is how the boundries set are enforced, after the data is scaled, it is clipped so that data outside the plot range is simply not shown.

References svkDataView::ClipMapperToTlcBrc(), svkDataView::dataVector, svkDataView::GetProp(), svkPlotGridView::MR4D, svkPlotGridView::PLOT_GRID, svkPlotGridView::plotGrids, and svkDataView::tlcBrc.

Referenced by svkPlotGridView::SetSlice(), and svkPlotGridView::SetTlcBrc().

void GeneratePlotGridActor ( )

Creates the actor that outlines the voxels

References svkDataView::dataVector, svkDataView::GetProp(), svkDataView::GetRenderer(), svkPlotGridView::MR4D, svkPlotGridView::PLOT_GRID, and svkPlotGridView::PRIMARY.

Referenced by svkPlotGridView::SetInput().

svkPlotLine::PlotComponent GetActiveComponent ( )

Gets the component of the active plot.

References svkPlotGridView::plotGrids.

svk4DImageData * GetActiveInput ( )

Returns the active input dataset.

Returns

References svkPlotGridView::plotGrids.

Referenced by svkPlotGridView::ShowView().

svkImageData * GetActivePlot ( )

virtual

Returns the svkImageData object of the active plot.

Returns

References svkDataView::dataVector.

Referenced by svkPlotGridView::SetActivePlotIndex().

int GetActivePlotIndex ( )

virtual

Gets the index of the plot that is currently active.

Returns

string GetDataCompatibility	(	svkImageData *	data,
		int	targetIndex
	)

protected

Check to make sure a given dataset is comptabile with the currently loaded data sets.

Parameters

data	the prospective data.
targetIndex	the index in which the data is trying to be placed.

Returns: resultInfo returns an empty string if the dataset is compatible, otherwise an explaination of why the dataset is not compatible is returned.

References svkPlotGridView::ADDITIONAL_MR4D, svkDataValidator::AreCellDataArrayStructureSame(), svkDataValidator::AreDataCompatible(), svkDataValidator::AreDataGeometriesSame(), svkDataView::dataVector, svkDataValidator::INVALID_DATA_ORIENTATION, svkDataValidator::IsInvalid(), svkDataView::isValidationOn, svkPlotGridView::MET, svkPlotGridView::MR4D, svkDataValidator::New(), and svkDataValidator::resultInfo.

Referenced by svkPlotGridView::SetInput().

string GetDecimalFormat ( int digits )

Creates a printf style string for formatting the overlay text. Takes the number of digits after the decimal as input.

References svkTypeUtils::IntToString().

Referenced by svkPlotGridView::SetOverlayTextDigits().

int GetNumberOfReferencePlots ( )

virtual

References svkPlotGridView::plotGrids.

double * GetOverlayWLRange ( )

virtual

Method gets the window level range for the overlay.

double * GetPlotColor ( int plotIndex )

virtual

Sets the color for the given plot index.

References svkPlotGridView::plotGrids.

bool GetPlotVisibility ( int plotIndex )

virtual

Returns if the requested plot is visible, otherwise returns false.

Parameters

plotIndex

Returns

References svkPlotGridView::plotGrids.

string GetScientificFormat ( int digits )

Creates a printf style string for formatting the overlay text. Takes the number of significant digits as input.

References svkTypeUtils::IntToString().

Referenced by svkPlotGridView::SetOverlayTextDigits().

int GetVolumeIndex ( int volumeIndex = 0 )

virtual

Getter for the index of current volume.

Parameters

volumeIndex

Returns

int * GetVolumeIndexArray ( )

virtual

Getter for the index of current volume.

Parameters

volumeIndex

Returns

void GetWindowLevelRange	(	double &	lower,
		double &	upper,
		int	index
	)

virtual

References svkPlotGridView::AMPLITUDE, svkPlotGridView::FREQUENCY, and svkPlotGridView::plotGrids.

void HideView ( )

Hides all the actors.

References svkPlotGridView::DETAILED_PLOT, svkDataView::GetProp(), svkDataView::GetRenderer(), svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::PLOT_GRID, svkPlotGridView::PLOT_LINES, svkPlotGridView::PRIMARY, and svkPlotGridView::VOL_SELECTION.

int * HighlightSelectionVoxels ( )

protected

Method highlights voxels within the selection box

Returns: tlcBrc the cell id's of the desired top left, bottom right corners

References svkDataView::dataVector, svkPlotGridView::MR4D, svkDataView::orientation, svkPlotGridView::SetTlcBrc(), svkDataView::slice, and svkDataView::tlcBrc.

Referenced by svkPlotGridView::SetInput().

static svkPlotGridView* New ( )

static

Referenced by svkPlotGridViewController::Reset(), and svkPlotGridViewController::svkPlotGridViewController().

void Refresh ( )

virtual

Method is called when data object is Modified.

Reimplemented from svkDataView.

References svkDataView::Refresh(), svkDetailedPlotDirector::Refresh(), and svkDataView::tlcBrc.

Referenced by svkPlotGridView::CreateMetaboliteOverlay(), svkPlotGridView::SetActiveOverlayVolume(), svkPlotGridView::SetComponent(), svkPlotGridView::SetInput(), svkPlotGridView::SetLUT(), svkPlotGridView::SetOrientation(), svkPlotGridView::SetOverlayWLRange(), svkPlotGridView::SetPlotColor(), svkPlotGridView::SetPlotVisibility(), svkPlotGridView::SetSlice(), svkPlotGridView::SetTlcBrc(), svkPlotGridView::SetVolumeIndex(), and svkPlotGridView::SetWindowLevelRange().

void RemoveInput ( int index )

virtual

Removes a data input and the associated actors. Currently only implemented for overlay.

Reimplemented from svkDataView.

References svkDataView::GetProp(), svkDataView::GetRenderer(), svkPlotGridView::MET, svkImageActor::New(), svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::PRIMARY, and svkDataView::SetProp().

void SetActiveComponent ( svkPlotLine::PlotComponent component )

Sets the component of the active plot.

References svkPlotGridView::SetComponent().

void SetActiveOverlayVolume ( int volume )

Sets the active overlay volume.

Parameters

volume

References svkDataView::dataVector, svkPlotGridView::MET, svkPlotGridView::Refresh(), svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlotOverlay().

void SetActivePlotIndex ( int index )

virtual

Sets the active plot.

Parameters

index

References svkDataView::dataVector, svkPlotGridView::GetActivePlot(), svkDataView::GetRenderer(), svkPlotGridView::MR4D, svkPlotGridView::plotGrids, svkPlotGridView::PRIMARY, and svkSatBandSet::SetInput().

void SetColorSchema ( int colorSchema )

protected

Sets the color schema. Currently we only support one light-on-dark and one dark-on-light. Used for making a printable version.

Parameters

colorSchema the color scheme you want, options are svkPlotGriView::LIGHT_ON_DARK or svkPlotGridView::DARK_ON_LIGHT

References svkPlotGridView::DARK_ON_LIGHT, svkDataView::GetProp(), svkDataView::GetRenderer(), svkPlotGridView::LIGHT_ON_DARK, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::plotGrids, svkPlotGridView::PRIMARY, svkDetailedPlotDirector::SetBackgroundColor(), and svkDetailedPlotDirector::SetPlotColor().

void SetComponent	(	svkPlotLine::PlotComponent	component,
		int	plotIndex = `-1`
	)

References svkPlotGridView::plotGrids, svkPlotGridView::Refresh(), svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlot().

Referenced by svkPlotGridView::SetActiveComponent().

void SetInput	(	svkImageData *	data,
		int	index
	)

virtual

Set input data and initialize default range values. Also, should call ObserveData. Does some compatibility checking based on what is currently loaded.

Parameters

data	the candidate data for input
index	the index in which to set the data

Implements svkDataView.

Referenced by svkPlotGridView::AddReferenceInput().

void SetLUT ( svkLookupTable::svkLookupTableType type )

protected

References svkDataView::dataVector, svkLookupTable::GetAlphaThreshold(), svkPlotGridView::MET, svkLookupTable::New(), svkPlotGridView::Refresh(), svkLookupTable::SetAlphaThreshold(), and svkLookupTable::SetLUTType().

void SetOrientation ( svkDcmHeader::Orientation orientation )

virtual

Reimplemented from svkDataView.

References svkPlotGridView::AlignCamera(), svkDataView::dataVector, svkDataView::GetRenderer(), svkDataView::GetSlice(), svkPlotGridView::MR4D, svkDataView::orientation, svkPlotGridView::plotGrids, svkPlotGridView::PRIMARY, svkPlotGridView::Refresh(), svkSatBandSet::SetOrientation(), svkPlotGridView::SetSlice(), svkPlotGridView::SetTlcBrc(), and svkPlotGridView::UpdateMetaboliteTextDisplacement().

Referenced by svkPlotGridView::SetInput().

void SetOverlayOpacity ( double opacity )

protected

Sets the opacity of the image overlay.

Parameters

opacity the new opacity you wish the image overlay to have.

References svkDataView::dataVector, svkDataView::GetProp(), svkPlotGridView::MET, svkPlotGridView::OVERLAY_IMAGE, and svkDetailedPlotDirector::SetBackgroundOpacity().

Referenced by svkPlotGridView::CreateMetaboliteOverlay().

void SetOverlayTextDigits ( int digits )

Sets the minimum number of digits after the decimal point for the overlay text.

References svkDataView::dataVector, svkPlotGridView::GetDecimalFormat(), svkDataView::GetProp(), svkPlotGridView::GetScientificFormat(), svkPlotGridView::MET, and svkPlotGridView::OVERLAY_TEXT.

Referenced by svkPlotGridView::CreateMetaboliteOverlay().

void SetOverlayThreshold ( double threshold )

Sets the threshold of the image overlay.

Parameters

threshold the new threshold you wish the image overlay to have.

References svkDataView::GetProp(), svkPlotGridView::OVERLAY_IMAGE, svkLookupTable::SetAlphaThreshold(), svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlotOverlay().

void SetOverlayWLRange ( double * range )

virtual

Method sets the window level range for the overlay.

References svkDataView::GetProp(), svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::Refresh(), svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlotOverlay().

void SetPlotColor	(	int	plotIndex,
		double *	rgb
	)

virtual

Sets the color for the given plot index.

References svkPlotGridView::plotGrids, svkPlotGridView::Refresh(), svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlot().

void SetPlotLineWidth ( float width )

virtual

References svkPlotGridView::plotGrids, and svkDetailedPlotDirector::SetLineWidth().

void SetPlotUnits ( svkSpecPoint::UnitType plotUnitType )

Parameters

type

References svkDataView::dataVector, svkDetailedPlotDirector::GenerateAbscissa(), GetDcmHeader(), and svkPlotGridView::MR4D.

void SetPlotVisibility	(	int	plotIndex,
		bool	visible
	)

virtual

Show or hide the given plot by index.

Parameters

index
visible

References svkPlotGridView::plotGrids, svkPlotGridView::Refresh(), svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlot().

void SetRWInteractor ( vtkRenderWindowInteractor * rwi )

virtual

Sets the interactor, and attach a renderer it its window. NOTE: This will remove any/all renderers that may have been in the renderWindow.

TODO: AddRenderer can throw an error if the RenderWindow has not been initialized, either add a check or re-implement.

Parameters

rwi	the vtkRendererWindowInteractor you wish to associate with the view

Reimplemented from svkDataView.

References svkDataView::GetRenderer(), svkPlotGridView::PRIMARY, svkDataView::rwi, and svkDataView::TurnRendererOn().

void SetSelection	(	double *	selectionArea,
		bool	isWorldCords = `0`
	)

protected

Sets desired the current selection in Display (pixels) coordinates and highlights the intersected voxels.

Parameters

selectionArea the area you wish to select voxels within [xmin, xmax, ymin, ymax]

References svkDataView::dataVector, svkDataView::GetRenderer(), svkVoxelTaggingUtils::IsImageVoxelTagData(), svkPlotGridView::MET, svkPlotGridView::MR4D, svkDataView::orientation, svkPlotGridView::PRIMARY, svkDataView::rwi, svkPlotGridView::SetTlcBrc(), svkDataView::slice, and svkVoxelTaggingUtils::ToggleVoxelTag().

void SetSlice ( int slice )

virtual

void SetTlcBrc ( int tlcBrc[2] )

virtual

Referenced by svkPlotGridView::HighlightSelectionVoxels(), svkPlotGridView::SetInput(), svkPlotGridView::SetOrientation(), and svkPlotGridView::SetSelection().

void SetTlcBrc	(	int	tlcID,
		int	brcID
	)

virtual

Currently this method is being used to set the selection range. This should be changed to have a more meaningful name, or be implemented differently.

TODO: Re-implement once svkDataImage is being used to pass Actor settings.

Parameters

tlcID	the id of the top left corner voxel
tlcID	the id of the bottom right corner voxel

References svkDetailedPlotDirector::AddOnMouseMoveObserver(), svkPlotGridView::AlignCamera(), svkDataView::dataVector, svkPlotGridView::DETAILED_PLOT, svkPlotGridView::GenerateClippingPlanes(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkDataView::IsTlcBrcWithinData(), svkPlotGridView::MR4D, svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::PLOT_GRID, svkPlotGridView::plotGrids, svkPlotGridView::PRIMARY, svkPlotGridView::Refresh(), svkDetailedPlotDirector::RemoveOnMouseMoveObserver(), svkPlotGridView::RULER, svkDataView::rwi, svkDataView::tlcBrc, svkPlotGridView::TurnPropOff(), svkPlotGridView::TurnPropOn(), svkPlotGridView::UpdateDetailedPlot(), svkPlotGridView::UpdateMetaboliteImage(), svkPlotGridView::UpdateMetaboliteText(), and svkPlotGridView::VOL_SELECTION.

void SetVolumeIndex	(	int	index,
		int	volumeIndex = `0`,
		int	plotIndex = `-1`
	)

virtual

Set the index for the given volume dimension index.

Parameters

index	the index of the volume
volumeIndex	the index of the volume dimension
plotIndex	the index of the plot line you wish to modify

References svkPlotGridView::plotGrids, svkPlotGridView::Refresh(), svkDataView::rwi, svkDataView::tlcBrc, and svkPlotGridView::UpdateDetailedPlot().

void SetWindowLevelRange	(	double	lower,
		double	upper,
		int	index
	)

virtual

SetWindowLevel for plot view; index 0 is frequency, index 1 is intensity. NOTE: Method assumes that frequency ranges are in integers (points).

Parameters

lower	the lower limit
upper	the upper limit
index	which dimension you wish to change, frequency or magnitude

Reimplemented from svkDataView.

References svkPlotGridView::AMPLITUDE, svkPlotGridView::FREQUENCY, svkPlotGridView::plotGrids, svkPlotGridView::Refresh(), svkDetailedPlotDirector::SetIndexRange(), svkDetailedPlotDirector::SetYRange(), and svkDataView::tlcBrc.

void ShowView ( )

Reveals all the appropriate actors.

References svkPlotGridView::DETAILED_PLOT, svkPlotGridView::GetActiveInput(), svkImageData::GetDcmHeader(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkDcmHeader::GetStringValue(), svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkPlotGridView::PLOT_GRID, svkPlotGridView::PLOT_LINES, svkPlotGridView::PRIMARY, svkDataView::tlcBrc, and svkPlotGridView::VOL_SELECTION.

void TurnPropOff ( int propIndex )

virtual

Turns off the given prop, in both the view and in the detailed plot directory

Reimplemented from svkDataView.

References svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkDetailedPlotDirector::SetAnnotationTextVisibility(), and svkDetailedPlotDirector::SetBackgroundVisibility().

Referenced by svkPlotGridView::CreateMetaboliteOverlay(), svkPlotGridView::SetInput(), svkPlotGridView::SetTlcBrc(), and svkPlotGridView::svkPlotGridView().

void TurnPropOn ( int propIndex )

virtual

Turns on the given prop, in both the view and in the detailed plot directory

Reimplemented from svkDataView.

References svkPlotGridView::OVERLAY_IMAGE, svkPlotGridView::OVERLAY_TEXT, svkDetailedPlotDirector::SetAnnotationTextVisibility(), and svkDetailedPlotDirector::SetBackgroundVisibility().

Referenced by svkPlotGridView::CreateMetaboliteOverlay(), svkPlotGridView::SetInput(), svkPlotGridView::SetTlcBrc(), and svkPlotGridView::svkPlotGridView().

void UpdateDetailedPlot ( int * tlcBrc )

protected

Parameters

tlcBrc

References svkDetailedPlotDirector::AddInput(), svkDataView::dataVector, svkDetailedPlotDirector::GenerateAbscissa(), GetDcmHeader(), svkPlotGridView::MR4D, svkPlotGridView::plotGrids, svkDetailedPlotDirector::RemoveAllInputs(), svkDetailedPlotDirector::SetIndexRange(), svkDetailedPlotDirector::SetPlotColor(), and svkPlotGridView::UpdateDetailedPlotOverlay().

Referenced by svkPlotGridView::SetComponent(), svkPlotGridView::SetInput(), svkPlotGridView::SetPlotColor(), svkPlotGridView::SetPlotVisibility(), svkPlotGridView::SetSlice(), svkPlotGridView::SetTlcBrc(), and svkPlotGridView::SetVolumeIndex().

void UpdateDetailedPlotOverlay ( int tlcID )

protected

Updates the overlay color and text in the detailed plot director

References svkDataView::dataVector, svkTypeUtils::DoubleToString(), svkDataView::GetProp(), svkPlotGridView::MET, svkPlotGridView::OVERLAY_IMAGE, svkDetailedPlotDirector::SetAnnotationText(), svkDetailedPlotDirector::SetBackgroundColor(), and svkDetailedPlotDirector::SetBackgroundOpacity().

Referenced by svkPlotGridView::SetActiveOverlayVolume(), svkPlotGridView::SetOverlayThreshold(), svkPlotGridView::SetOverlayWLRange(), and svkPlotGridView::UpdateDetailedPlot().

void UpdateMetaboliteImage ( int * tlcBrc )

protected

Updates the visible metabolite values depending on the selection

Parameters

tlcBrc points to a legth two int vector, the first index being the top left corner and the second being the bottom right.

References svkDataView::dataVector, svkDataView::GetProp(), svkPlotGridView::MR4D, svkDataView::orientation, svkPlotGridView::OVERLAY_IMAGE, and svkDataView::slice.

Referenced by svkPlotGridView::SetSlice(), and svkPlotGridView::SetTlcBrc().

void UpdateMetaboliteText ( int * tlcBrc )

protected

Updates the visible metabolite values depending on the selection

Parameters

tlcBrc points to a legth two int vector, the first index being the top left corner and the second being the bottom right.

References svkDataView::dataVector, svkPlotGridView::metClippers, and svkPlotGridView::MR4D.

Referenced by svkPlotGridView::CreateMetaboliteOverlay(), svkPlotGridView::SetSlice(), and svkPlotGridView::SetTlcBrc().

void UpdateMetaboliteTextDisplacement ( )

protected

The actor that represents the text values of the metabolite overlays will, by default, render the text at the center of each voxel. We want the text to show up in the top left corner of each voxel. To do this we will apply a transform to the actor to translate it.

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::dataVector, svkDataView::GetProp(), svkVoxelTaggingUtils::IsImageVoxelTagData(), svkPlotGridView::MET, svkDataView::orientation, svkPlotGridView::OVERLAY_TEXT, and svkDcmHeader::SAGITTAL.

Referenced by svkPlotGridView::CreateMetaboliteOverlay(), and svkPlotGridView::SetOrientation().