svkDcmRawDataReader Class Reference

#include <svkDcmRawDataReader.h>

Inheritance diagram for svkDcmRawDataReader:

Public Member Functions
	vtkTypeMacro (svkDcmRawDataReader, svkDcmVolumeReader)
virtual const char *	GetDescriptiveName ()
virtual svkImageReader2::ReaderType	GetReaderType ()
virtual int	CanReadFile (const char *fname)
void	ExtractFiles ()
void	SetOutputDir (vtkstd::string outDir)
Public Member Functions inherited from svkDcmVolumeReader
	vtkTypeMacro (svkDcmVolumeReader, svkImageReader2)
Public Member Functions inherited from svkImageReader2
	vtkTypeMacro (svkImageReader2, vtkImageReader2)
svkImageData *	GetOutput ()
svkImageData *	GetOutput (int)
svkDcmHeader *	GetDcmHeader (const char *fileName)
void	OnlyReadOneInputFile ()
void	OnlyGlobFiles ()
void	GlobFileNames ()
void	OnlyReadHeader (bool onlyReadHeader)

Static Public Member Functions
static svkDcmRawDataReader *	New ()
Static Public Member Functions inherited from svkDcmVolumeReader
static float	GetFloatValAttribute7 (vector< string > vec)
static int	GetIntValAttribute8 (vector< string > vec)
static void	GetVOILUTScaledPixels (float *floatPixels, unsigned short *shortPixels, float center, float window, int numberOfPixels)
Static Public Member Functions inherited from svkImageReader2
static string	StripWhite (string in)
static string	RemoveDelimFromDate (string *slashDate, char delimChar= '/')
static string	GetFileRoot (const char *fname)
static string	GetFileExtension (const char *fname)
static string	GetFilePath (const char *fname)
static string	GetFileNameWithoutPath (const char *fname)
static long	GetFileSize (ifstream *fs)

Protected Member Functions
	svkDcmRawDataReader ()
	~svkDcmRawDataReader ()
virtual int	FillOutputPortInformation (int port, vtkInformation *info)
virtual void	ExecuteInformation ()
Protected Member Functions inherited from svkDcmVolumeReader
	svkDcmVolumeReader ()
	~svkDcmVolumeReader ()
virtual void	ExecuteDataWithInformation (vtkDataObject *output, vtkInformation *outInfo)
ProprietarySOP	ContainsProprietaryContent (svkImageData *data)
void	InitFileNames ()
void	OnlyReadInputFile ()
void	SortFilesByImagePositionPatient (vector< vector< string > > &dcmSeriesAttributes, bool ascending)
void	SortFilesByInstanceNumber (vector< vector< string > > &dcmSeriesAttributes, int numSlicesPerVol, bool ascending)
virtual void	InitDcmHeader ()
void	InitSliceOrder ()
void	InitSliceOrder (string hfileStart, string fileEnd)
virtual bool	CheckForMultiVolume ()
float	GetSliceSpacing ()
virtual void	CleanAttributes (set< string > *uniqueSlices)
Protected Member Functions inherited from svkImageReader2
	svkImageReader2 ()
	~svkImageReader2 ()
void	SetupOutputInformation ()
void	SetupOutputExtent ()
void	SetupOutputScalarData ()
virtual void	ReadLine (ifstream *hdr, istringstream *iss)
void	ReadLineIgnore (ifstream *hdr, istringstream *iss, char delim)
string	ReadLineSubstr (ifstream *hdr, istringstream *iss, int start, int stop)
string	ReadLineValue (ifstream *hdr, istringstream *iss, char delim)
int	ReadLineKeyValue (ifstream *hdr, istringstream *iss, char delim, string *key, string *value)
virtual void	SetProvenance ()
virtual string	GetFileSeriesDescription (string fileName)
void	SetReadLength (int length)

Additional Inherited Members
Public Types inherited from svkImageReader2
enum	ReaderType {   UNDEFINED = -1, DICOM_MRS =0, DICOM_MRI, DICOM_ENHANCED_MRI,   DICOM_SEGMENTATION, DICOM_RAW, SIEMENS_RDA, VARIAN_FID,   VARIAN_FDF, GE_PFILE, GE_SDBM, GE_POSTAGE_STAMP,   GE_SIGNA_LX2, GE_SIGNA_5X, LC_MODEL_COORD, LC_MODEL_CSV,   LC_MODEL_TABLE, VARIABLE_FLIP_DAT, BRUKER_MRS, PHILIPS_S,   DDF, IDF, LAST_TYPE = IDF }
Protected Types inherited from svkDcmVolumeReader
enum	ProprietarySOP { DICOM_STD_SOP = 0, GE_POSTAGE_STAMP_SOP, BRUKER_MRS_SOP }
Protected Attributes inherited from svkDcmVolumeReader
int	numFrames
svkDcmHeader::DcmDataOrderingDirection	dataSliceOrder
int	numVolumes
Protected Attributes inherited from svkImageReader2
vtkDataArray *	dataArray
bool	readOneInputFile
bool	onlyGlobFiles
bool	onlyReadHeader

Detailed Description

Reads DICOM RawData SOP instances encoded with SIVIC tools.

Constructor & Destructor Documentation

svkDcmRawDataReader ( )

protected

~svkDcmRawDataReader ( )

protected

Member Function Documentation

int CanReadFile ( const char *  fname )

virtual

Mandator, must be overridden to get the factory to check for proper type of vtkImageReader2 to return.

References svkDcmHeader::ElementExists(), svkImageData::GetDcmHeader(), svkDcmHeader::GetStringValue(), svkDcmHeader::IsFileDICOM(), svkMriImageData::New(), and svkDcmHeader::ReadDcmFile().

void ExecuteInformation ( )

protectedvirtual

Side effect of Update() method. Used to load pixel data and initialize vtkImageData Called before ExecuteData()

Reimplemented from svkDcmVolumeReader.

References svkDcmVolumeReader::InitDcmHeader().

void ExtractFiles

(

)

Init the Shared and PerFrame sequences and load the pixel data into the svkImageData object.

References svkDcmHeader::ElementExists(), svkImageData::GetDcmHeader(), svkDcmHeader::GetFloatSequenceItemElement(), svkDcmHeader::GetIntSequenceItemElement(), svkDcmHeader::GetLongIntSequenceItemElement(), svkDcmHeader::GetNumberOfItemsInSequence(), svkImageReader2::GetOutput(), svkDcmHeader::GetSequenceItemElementLength(), svkDcmHeader::GetStringSequenceItemElement(), svkMriImageData::New(), and svkDcmHeader::ReadDcmFile().

int FillOutputPortInformation ( int  port, vtkInformation *  info  )

protectedvirtual

Reimplemented from svkImageReader2.

virtual const char* GetDescriptiveName ( )

inlinevirtual

virtual svkImageReader2::ReaderType GetReaderType ( )

inlinevirtual

Implements svkImageReader2.

References svkImageReader2::DICOM_RAW.

static svkDcmRawDataReader* New ( )

static

Referenced by svkImageReaderFactory::CreateImageReader2(), and svkImageReaderFactory::svkImageReaderFactory().

void SetOutputDir

(

vtkstd::string

outDir

)

Set the path to extract files into

vtkTypeMacro	(	svkDcmRawDataReader	,
		svkDcmVolumeReader
	)

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The documentation for this class was generated from the following files:

• svkDcmRawDataReader.h
• svkDcmRawDataReader.cc