#include <svkMetaboliteMap.h>

Inheritance diagram for svkMetaboliteMap:

Public Types
enum	algorithm { INTEGRATE = 0, PEAK_HT = 1, MAG_PEAK_HT = 2, LINE_WIDTH = 3, MAG_LINE_WIDTH = 4, MAG_INTEGRATE = 5 }

Public Member Functions
	vtkTypeMacro (svkMetaboliteMap, svkImageAlgorithm)

void	SetSeriesDescription (vtkstd::string newSeriesDescription)

void	SetOutputDataType (svkDcmHeader::DcmPixelDataFormat dataType)

void	SetZeroCopy (bool zeroCopy)

void	SetPeakPosPPM (float peak_center_ppm)

void	SetPeakWidthPPM (float peak_width_ppm)

void	SetAlgorithmToIntegrate ()

void	SetAlgorithmToPeakHeight ()

void	SetAlgorithmToMagPeakHeight ()

void	SetAlgorithmToLineWidth ()

void	SetAlgorithmToMagLineWidth ()

void	SetAlgorithmToMagIntegrate ()

void	SetAlgorithm (vtkstd::string algo)

void	SetVerbose (bool isVerbose)

void	LimitToSelectedVolume (float fraction=0.5001)

short *	GetSelectedVolumeMask ()

Public Member Functions inherited from svkImageAlgorithm
	vtkTypeMacro (svkImageAlgorithm, vtkImageAlgorithm)

svkImageData *	GetOutput ()

svkImageData *	GetOutput (int port)

svkImageData *	GetImageDataInput (int port)

Static Public Member Functions
static svkMetaboliteMap *	New ()

static double	GetIntegral (float *specPtr, int startPt, int endPt)

static double	GetMagIntegral (float *specPtr, int startPt, int endPt)

static double	GetPeakHt (float *specPtr, int startPt, int endPt)

static double	GetMagPeakHt (float *specPtr, int startPt, int endPt)

Protected Member Functions
	svkMetaboliteMap ()

	~svkMetaboliteMap ()

virtual int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

virtual int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

void	ZeroData ()

virtual int	FillInputPortInformation (int vtkNotUsed(port), vtkInformation *info)

virtual int	FillOutputPortInformation (int vtkNotUsed(port), vtkInformation *info)

Protected Member Functions inherited from svkImageAlgorithm
	svkImageAlgorithm ()

	~svkImageAlgorithm ()

Detailed Description

Class to extract an svkMriImageData object out of an svkMrsImageData object. This is useful for generating metaboite maps or other maps from spectral, dynamic or other multi- volumetric data.

Member Enumeration Documentation

enum algorithm

Enumerator
INTEGRATE
PEAK_HT
MAG_PEAK_HT
LINE_WIDTH
MAG_LINE_WIDTH
MAG_INTEGRATE

Constructor & Destructor Documentation

svkMetaboliteMap ( )

protected

References svkMetaboliteMap::INTEGRATE.

~svkMetaboliteMap ( )

protected

Member Function Documentation

int FillInputPortInformation	(	int	vtkNotUsedport,
		vtkInformation *	info
	)

protectedvirtual

Default input type is svkImageData base class. Override with a specific concrete type in sub class if necessary.

Reimplemented from svkImageAlgorithm.

int FillOutputPortInformation	(	int	vtkNotUsedport,
		vtkInformation *	info
	)

protectedvirtual

Output from this algo is an svkMriImageData object.

Reimplemented from svkImageAlgorithm.

double GetIntegral	(	float *	specPtr,
		int	startPt,
		int	endPt
	)

static

Gets integral of real component over the specified range from startPt to endPt.

double GetMagIntegral	(	float *	specPtr,
		int	startPt,
		int	endPt
	)

static

Gets integral of real component over the specified range from startPt to endPt.

double GetMagPeakHt	(	float *	specPtr,
		int	startPt,
		int	endPt
	)

static

Gets max peak ht of magnitude spectrum over the specified range from startPt to endPt.

double GetPeakHt	(	float *	specPtr,
		int	startPt,
		int	endPt
	)

static

Gets max peak ht of real component over the specified range from startPt to endPt.

Referenced by svkMRSZeroOrderPhaseCostFunction::GetZeroOrderPhaseCost_2().

short * GetSelectedVolumeMask ( )

void LimitToSelectedVolume ( float fraction = 0.5001 )

static svkMetaboliteMap* New ( )

static

int RequestData	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

protectedvirtual

Copy the Dcm Header and Provenance from the input to the output.

References svkImageData::GetDcmHeader(), svkImageAlgorithm::GetImageDataInput(), svkImageData::GetNumberOfVoxels(), svkImageAlgorithm::GetOutput(), svkDcmHeader::InsertUniqueUID(), and svkDcmHeader::SetValue().

int RequestInformation	(	vtkInformation *	request,
		vtkInformationVector **	inputVector,
		vtkInformationVector *	outputVector
	)

protectedvirtual

Resets the origin and extent for correct initialization of output svkMriImageData object from input svkMrsImageData object.

References svkImageData::GetDcmHeader(), svkImageAlgorithm::GetImageDataInput(), and svkDcmHeader::GetOrigin().

void SetAlgorithm ( vtkstd::string algo )

References svkMetaboliteMap::SetAlgorithmToIntegrate(), svkMetaboliteMap::SetAlgorithmToLineWidth(), svkMetaboliteMap::SetAlgorithmToMagIntegrate(), svkMetaboliteMap::SetAlgorithmToMagLineWidth(), svkMetaboliteMap::SetAlgorithmToMagPeakHeight(), and svkMetaboliteMap::SetAlgorithmToPeakHeight().

void SetAlgorithmToIntegrate ( )

References svkMetaboliteMap::INTEGRATE.

Referenced by svkMetaboliteMap::SetAlgorithm().

void SetAlgorithmToLineWidth ( )

References svkMetaboliteMap::LINE_WIDTH.

Referenced by svkMetaboliteMap::SetAlgorithm().

void SetAlgorithmToMagIntegrate ( )

References svkMetaboliteMap::MAG_INTEGRATE.

Referenced by svkMetaboliteMap::SetAlgorithm().

void SetAlgorithmToMagLineWidth ( )

References svkMetaboliteMap::MAG_LINE_WIDTH.

Referenced by svkMetaboliteMap::SetAlgorithm().

void SetAlgorithmToMagPeakHeight ( )

References svkMetaboliteMap::MAG_PEAK_HT.

Referenced by svkMetaboliteMap::SetAlgorithm().

void SetAlgorithmToPeakHeight ( )

References svkMetaboliteMap::PEAK_HT.

Referenced by svkMetaboliteMap::SetAlgorithm().

void SetOutputDataType ( svkDcmHeader::DcmPixelDataFormat dataType )

void SetPeakPosPPM ( float centerPPM )

Set the chemical shift of the peak position to integrate over.

void SetPeakWidthPPM ( float widthPPM )

Set the chemical shift range to integrate over. Integration will be +/- 1/2 this width about the peak position.

void SetSeriesDescription ( vtkstd::string newSeriesDescription )

Set the series description for the DICOM header of the copy.

void SetVerbose ( bool isVerbose )

Write the integrals for each voxel to stdout. Default is false.

void SetZeroCopy ( bool zeroCopy )

vtkTypeMacro	(	svkMetaboliteMap	,
		svkImageAlgorithm
	)

void ZeroData ( )

protected

Zero data

References svkImageData::GetNumberOfVoxels(), and svkImageAlgorithm::GetOutput().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation