#include <svkSiemensRdaReader.h>

Inheritance diagram for svkSiemensRdaReader:

Public Member Functions
	vtkTypeMacro (svkSiemensRdaReader, svkImageReader2)

virtual const char *	GetDescriptiveName ()

virtual svkImageReader2::ReaderType	GetReaderType ()

virtual int	CanReadFile (const char *fname)

Public Member Functions inherited from svkImageReader2
	vtkTypeMacro (svkImageReader2, vtkImageReader2)

svkImageData *	GetOutput ()

svkImageData *	GetOutput (int)

svkDcmHeader *	GetDcmHeader (const char *fileName)

void	OnlyReadOneInputFile ()

void	OnlyGlobFiles ()

void	GlobFileNames ()

void	OnlyReadHeader (bool onlyReadHeader)

Static Public Member Functions
static svkSiemensRdaReader *	New ()

Static Public Member Functions inherited from svkImageReader2
static string	StripWhite (string in)

static string	RemoveDelimFromDate (string *slashDate, char delimChar= '/')

static string	GetFileRoot (const char *fname)

static string	GetFileExtension (const char *fname)

static string	GetFilePath (const char *fname)

static string	GetFileNameWithoutPath (const char *fname)

static long	GetFileSize (ifstream *fs)

Protected Member Functions
	svkSiemensRdaReader ()

	~svkSiemensRdaReader ()

virtual int	FillOutputPortInformation (int port, vtkInformation *info)

virtual void	ExecuteInformation ()

virtual void	ExecuteDataWithInformation (vtkDataObject output, vtkInformation outInfo)

svkDcmHeader::DcmPixelDataFormat	GetFileType ()

Protected Member Functions inherited from svkImageReader2
	svkImageReader2 ()

	~svkImageReader2 ()

void	SetupOutputInformation ()

void	SetupOutputExtent ()

void	SetupOutputScalarData ()

virtual void	ReadLine (ifstream hdr, istringstream iss)

void	ReadLineIgnore (ifstream hdr, istringstream iss, char delim)

string	ReadLineSubstr (ifstream hdr, istringstream iss, int start, int stop)

string	ReadLineValue (ifstream hdr, istringstream iss, char delim)

int	ReadLineKeyValue (ifstream hdr, istringstream iss, char delim, string key, string value)

virtual void	SetProvenance ()

virtual string	GetFileSeriesDescription (string fileName)

void	SetReadLength (int length)

Additional Inherited Members
Public Types inherited from svkImageReader2
enum	ReaderType { UNDEFINED = -1, DICOM_MRS =0, DICOM_MRI, DICOM_ENHANCED_MRI, DICOM_SEGMENTATION, DICOM_RAW, SIEMENS_RDA, VARIAN_FID, VARIAN_FDF, GE_PFILE, GE_SDBM, GE_POSTAGE_STAMP, GE_SIGNA_LX2, GE_SIGNA_5X, LC_MODEL_COORD, LC_MODEL_CSV, LC_MODEL_TABLE, VARIABLE_FLIP_DAT, BRUKER_MRS, PHILIPS_S, DDF, IDF, LAST_TYPE = IDF }

Protected Attributes inherited from svkImageReader2
vtkDataArray *	dataArray

bool	readOneInputFile

bool	onlyGlobFiles

bool	onlyReadHeader

Detailed Description

This is a SIVIC reader for Siemens *.rda files. This class parses a Siemens rda header to initialize an svkMrsImageData object with an svkDcmHeader corresponding to a DICOM MR Spectroscopy Storage SOP class (SOP Class UID: 1.2.840.10008.5.1.4.1.1.4.2).

Thanks to Jeff Yager (Ph.D Candidate) and Vincent A. Magnotta, Ph.D. of the University of Iowa Department of Radiology for providing sample Siemens .rda phantom data.

Thanks to Bjoern Menze, Ph.D. of the MIT CSAIL Medical Vision Group (http://groups.csail.mit.edu/vision/medical-vision/members.html) for providing sample data and for help implementing and validating this class.

This is a beta release of this class. Spatial localization parameters are still being validated and DICOM IE initialization is being refactored into svkMRSIOD.

Constructor & Destructor Documentation

svkSiemensRdaReader ( )

protected

References svkImageReader2::dataArray.

~svkSiemensRdaReader ( )

protected

References svkImageReader2::dataArray.

Member Function Documentation

int CanReadFile ( const char * fname )

virtual

Check to see if the extension indicates a Siemens rda file. If so, try to open the file for reading. If that works, then return a success code. Return Values: 1 if can read the file, 0 otherwise.

References svkImageReader2::ReadLine().

void ExecuteDataWithInformation	(	vtkDataObject *	output,
		vtkInformation *	outInfo
	)

protectedvirtual

Side effect of Update() method. Used to load pixel data and initialize vtkImageData Called after ExecuteInformation()

References svkDcmHeader::GetDataDcos(), svkImageData::GetDcmHeader(), svkImageReader2::GetOutput(), svkDcmHeader::PrintDcmHeader(), and svkImageData::SetDcos().

void ExecuteInformation ( )

protectedvirtual

Side effect of Update() method. Used to initialize the svkDcmHeader member of the target svkImageData object and uses the header to set up the Output Informatin. Called before ExecuteData()

References svkImageReader2::SetupOutputInformation().