#include <svkVarianUCSF2DcsiMapper.h>

Inheritance diagram for svkVarianUCSF2DcsiMapper:

Public Member Functions
	vtkTypeMacro (svkVarianUCSF2DcsiMapper, svkVarianFidMapper)

Public Member Functions inherited from svkVarianFidMapper
	vtkTypeMacro (svkVarianFidMapper, vtkObject)

virtual void	InitializeDcmHeader (map< string, vector< vector< string > > > procparMap, svkDcmHeader header, svkMRSIOD iod, int swapBytes)

virtual void	ReadFidFile (string fidFileName, svkImageData *data)

Static Public Member Functions
static svkVarianUCSF2DcsiMapper *	New ()

Protected Member Functions
	svkVarianUCSF2DcsiMapper ()

	~svkVarianUCSF2DcsiMapper ()

virtual void	InitMRSpectroscopyPulseSequenceModule ()

virtual void	InitPixelMeasuresMacro ()

virtual void	InitPerFrameFunctionalGroupMacros ()

Protected Member Functions inherited from svkVarianFidMapper
	svkVarianFidMapper ()

	~svkVarianFidMapper ()

void	InitPatientModule ()

void	InitGeneralStudyModule ()

void	InitGeneralSeriesModule ()

void	InitGeneralEquipmentModule ()

virtual void	InitMultiFrameFunctionalGroupsModule ()

virtual void	InitMultiFrameDimensionModule ()

virtual void	InitAcquisitionContextModule ()

virtual void	InitSharedFunctionalGroupMacros ()

virtual void	InitMRModifierMacro ()

virtual void	InitMRTransmitCoilMacro ()

virtual void	InitMRAveragesMacro ()

virtual void	InitPlaneOrientationMacro ()

virtual void	InitMREchoMacro ()

virtual void	InitMRTimingAndRelatedParametersMacro ()

virtual void	InitMRReceiveCoilMacro ()

virtual void	InitMRSpectroscopyModule ()

virtual void	InitMRSpectroscopyFOVGeometryMacro ()

virtual void	InitMRSpectroscopyDataModule ()

string	GetDcmPatientPositionString ()

virtual void	ConvertCmToMm ()

int	GetHeaderValueAsInt (string keyString, int valueIndex=0, int procparRow=0)

float	GetHeaderValueAsFloat (string keyString, int valueIndex=0, int procparRow=0)

string	GetHeaderValueAsString (string keyString, int valueIndex=0, int procparRow=0)

virtual void	SetCellSpectrum (vtkImageData *data, int x, int y, int z, int timePt, int coilNum)

Additional Inherited Members
Protected Attributes inherited from svkVarianFidMapper
map< string, vector< vector < string > > >	procparMap

svkDcmHeader *	dcmHeader

float *	specData

svkDcmHeader::DcmDataOrderingDirection	dataSliceOrder

int	numSlices

int	numFrames

svkMRSIOD *	iod

int	swapBytes

Detailed Description

Concrete mapper for C13 UCSF 2D CSI Varian sequence.

contributors to the development of the 2D C13 CSI sequence and software : Sukumar Subramaniam, PhD (UCSF Surbeck Lab) Jason C. Crane, PhD (UCSF Surbeck Lab) Sarah J. Nelson, PhD (UCSF Surbeck Lab) Dan B. Vigneron, PhD (UCSF Surbeck Lab) John Kurhanewicz, PhD (UCSF Surbeck Lab)

Supported by: NIH P41EB013598