svkLCModelReader Class Reference

#include <svkLCModelReader.h>

Inheritance diagram for svkLCModelReader:

Public Member Functions
	vtkTypeMacro (svkLCModelReader, svkImageReader2)
virtual const char *	GetDescriptiveName ()
void	SetMRSFileName (string mrsFileName)
void	SetMetName (string metName)
Public Member Functions inherited from svkImageReader2
	vtkTypeMacro (svkImageReader2, vtkImageReader2)
svkImageData *	GetOutput ()
svkImageData *	GetOutput (int)
svkDcmHeader *	GetDcmHeader (const char *fileName)
void	OnlyReadOneInputFile ()
void	OnlyGlobFiles ()
void	GlobFileNames ()
void	OnlyReadHeader (bool onlyReadHeader)
virtual svkImageReader2::ReaderType	GetReaderType ()=0

Protected Member Functions
	svkLCModelReader ()
	~svkLCModelReader ()
virtual int	FillInputPortInformation (int port, vtkInformation *info)
virtual void	ExecuteInformation ()
virtual svkDcmHeader::DcmPixelDataFormat	GetFileType ()
string	GetSeriesDescription ()
void	GetVoxelIndexFromFileName (string lcmodelFileName, int *col, int *row, int *slice)
virtual string	GetFileSeriesDescription (string fileName)
Protected Member Functions inherited from svkImageReader2
	svkImageReader2 ()
	~svkImageReader2 ()
virtual int	FillOutputPortInformation (int port, vtkInformation *info)
void	SetupOutputInformation ()
void	SetupOutputExtent ()
void	SetupOutputScalarData ()
virtual void	ReadLine (ifstream *hdr, istringstream *iss)
void	ReadLineIgnore (ifstream *hdr, istringstream *iss, char delim)
string	ReadLineSubstr (ifstream *hdr, istringstream *iss, int start, int stop)
string	ReadLineValue (ifstream *hdr, istringstream *iss, char delim)
int	ReadLineKeyValue (ifstream *hdr, istringstream *iss, char delim, string *key, string *value)
virtual void	SetProvenance ()
void	SetReadLength (int length)

Protected Attributes
string	metName
Protected Attributes inherited from svkImageReader2
vtkDataArray *	dataArray
bool	readOneInputFile
bool	onlyGlobFiles
bool	onlyReadHeader

Additional Inherited Members
Public Types inherited from svkImageReader2
enum	ReaderType {   UNDEFINED = -1, DICOM_MRS =0, DICOM_MRI, DICOM_ENHANCED_MRI,   DICOM_SEGMENTATION, DICOM_RAW, SIEMENS_RDA, VARIAN_FID,   VARIAN_FDF, GE_PFILE, GE_SDBM, GE_POSTAGE_STAMP,   GE_SIGNA_LX2, GE_SIGNA_5X, LC_MODEL_COORD, LC_MODEL_CSV,   LC_MODEL_TABLE, VARIABLE_FLIP_DAT, BRUKER_MRS, PHILIPS_S,   DDF, IDF, LAST_TYPE = IDF }
Static Public Member Functions inherited from svkImageReader2
static string	StripWhite (string in)
static string	RemoveDelimFromDate (string *slashDate, char delimChar= '/')
static string	GetFileRoot (const char *fname)
static string	GetFileExtension (const char *fname)
static string	GetFilePath (const char *fname)
static string	GetFileNameWithoutPath (const char *fname)
static long	GetFileSize (ifstream *fs)

Constructor & Destructor Documentation

svkLCModelReader ( )

protected

~svkLCModelReader ( )

protected

Member Function Documentation

void ExecuteInformation ( )

protectedvirtual

Side effect of Update() method. Used to initialize the svkDcmHeader member of the target svkImageData object and uses the header to set up the Output Informatin. Called before ExecuteData()

int FillInputPortInformation ( int  port, vtkInformation *  info  )

protectedvirtual

• input ports 0 - 2 are required. All input ports are MRI data. 0: MRS template (required) 1: CSV file name (required) 2: met name (required)

virtual const char* GetDescriptiveName ( )

inlinevirtual

string GetFileSeriesDescription ( string  fileName )

protectedvirtual

get the series description for this file for globbing purposes to ensure all files have the same series description. For the LCModel reader this isn't relevant so just return an empty string.

Reimplemented from svkImageReader2.

svkDcmHeader::DcmPixelDataFormat GetFileType ( )

protectedvirtual

returns the data size.

Implements svkImageReader2.

References svkDcmHeader::SIGNED_FLOAT_4.

string GetSeriesDescription ( )

protected

Construct a series descrition for the file being loaded

Referenced by svkLCModelCSVReader::ExecuteDataWithInformation(), and svkLCModelTableReader::ExecuteDataWithInformation().

void GetVoxelIndexFromFileName ( string  lcmodelFileName, int *  col, int *  row, int *  slice  )

protected

Parse voxel col, row and slice coords out of LCMODEL csv or coord file output generated form SIVIC generated control files. test_1377_c9_r11_s4.csv test_1377_c9_r11_s4_sl4_11-9.coord

References svkImageReader2::GetFileNameWithoutPath(), and svkTypeUtils::StringToInt().

void SetMetName

(

string

metName

)

References svkLCModelReader::metName.

void SetMRSFileName

(

string

mrsFileName

)

References svkImageReaderFactory::CreateImageReader2(), and svkImageReaderFactory::New().

vtkTypeMacro	(	svkLCModelReader	,
		svkImageReader2
	)

Member Data Documentation

string metName

protected

Referenced by svkLCModelReader::SetMetName().

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The documentation for this class was generated from the following files:

• svkLCModelReader.h
• svkLCModelReader.cc