#include <svkOverlayView.h>

Inheritance diagram for svkOverlayView:

Public Types
enum	DataInputs { MRI = 0, MR4D = 1, OVERLAY = 2 }
	Enum represents input indecies. More...

enum	PropType { VOL_SELECTION = 0, SAT_BANDS_AXIAL, SAT_BANDS_AXIAL_OUTLINE, SAT_BANDS_CORONAL, SAT_BANDS_SAGITTAL, SAT_BANDS_CORONAL_OUTLINE, SAT_BANDS_SAGITTAL_OUTLINE, PLOT_GRID, AXIAL_OVERLAY_FRONT, AXIAL_OVERLAY_BACK, CORONAL_OVERLAY_FRONT, CORONAL_OVERLAY_BACK, SAGITTAL_OVERLAY_FRONT, SAGITTAL_OVERLAY_BACK, COORDINATES, COLOR_BAR, LAST_PROP = COLOR_BAR }
	Enum represents objects in the scene. More...

enum	InterpolationType { NEAREST = 0, LINEAR, SINC }
	Enum represents interpolation methods for the overlay. More...

enum	RendererType { PRIMARY = 0, MOUSE_LOCATION, LAST_RENDERER = MOUSE_LOCATION }
	Enum represents renderers in the window. More...

enum	{ LIGHT_ON_DARK = 0, DARK_ON_LIGHT }
	Enum represents color schema, used for printing. More...

Public Member Functions
	vtkTypeMacro (svkOverlayView, svkDataView)

	svkOverlayView ()

	~svkOverlayView ()

virtual void	SetInput (svkImageData *data, int index=0)

virtual void	SetInputPostReslice (svkImageData *data, int index)

virtual void	RemoveInput (int index)

virtual void	SetSlice (int slice)

virtual void	SetSlice (int slice, bool centerImage)

virtual void	SetSlice (int slice, svkDcmHeader::Orientation orientation)

virtual void	SetActiveImageVolume (int volume)

virtual void	SetActiveOverlayVolume (int volume)

virtual void	SetRWInteractor (vtkRenderWindowInteractor *)

string	GetDataCompatibility (svkImageData *data, int targetIndex)

void	TurnOrthogonalImagesOn ()

void	TurnOrthogonalImagesOff ()

bool	AreOrthogonalImagesOn ()

void	SetOrientation (svkDcmHeader::Orientation orientation)

void	ToggleSelBoxVisibilityOn ()

void	ToggleSelBoxVisibilityOff ()

void	AlignCamera ()

bool	IsImageInsideSpectra ()

void	SetLevel (double level)

double	GetLevel ()

void	SetWindow (double window)

double	GetWindow ()

void	SetColorOverlayWindow (double window)

void	SetColorOverlayLevel (double level)

double	GetColorOverlayWindow ()

double	GetColorOverlayLevel ()

bool	CheckDataOrientations ()

void	SetCameraZoom (double zoom)

svkLookupTable *	GetLookupTable ()

Public Member Functions inherited from svkDataView
	vtkTypeMacro (svkDataView, vtkObject)

	svkDataView ()
	Constructor. More...

	~svkDataView ()
	Destructor. More...

virtual svkImageData *	GetInput (int index=0)

virtual void	SetController (svkDataViewController *controller)

virtual svkDataViewController *	GetController ()

virtual int	GetSlice ()

virtual void	SetWindowLevelRange (double lower, double upper, int index)

virtual void	Refresh ()

virtual void	SetPropState (int propIndex, bool visible)

virtual void	TurnPropOn (int propIndex)

virtual void	TurnPropOff (int propIndex)

virtual bool	IsPropOn (int propIndex)

virtual void	SetRendererState (int rendererIndex, bool visible)

virtual void	TurnRendererOn (int rendererIndex)

virtual void	TurnRendererOff (int rendererIndex)

virtual bool	IsRendererOn (int rendererIndex)

virtual void	SetVisibility (int actorIndex, bool visible)
	Is it in the views current displayed FOV? More...

virtual vtkRenderer *	GetRenderer (int index)

virtual void	SetRenderer (int index, vtkRenderer *ren)

virtual vtkProp *	GetProp (int index)

virtual void	SetProp (int index, vtkProp *prop)

virtual svkDcmHeader::Orientation	GetOrientation ()

void	ValidationOff ()

Static Public Member Functions
static svkOverlayView *	New ()

Static Public Member Functions inherited from svkDataView
static void	ClipMapperToTlcBrc (svkImageData data, vtkAbstractMapper mapper, int tlcBrc[2], double clip_tolerance_row, double clip_tolerance_column, double clip_tolerance_slice)

static void	GetClippingIndexFromTlcBrc (svkImageData *data, int indexRange[2][3], int tlcBrc[2])

static void	GetClippingPlanes (vtkPlaneCollection planes, svkImageData data, int *tlcBrc, double clip_tolerance_row, double clip_tolerance_column, double clip_tolerance_slice)

static bool	IsTlcBrcWithinData (svkImageData *data, int tlcBrc[2])

static bool	IsTlcBrcWithinData (svkImageData *data, int tlcID, int brcID)

static void	ResetTlcBrcForNewOrientation (svkImageData *data, svkDcmHeader::Orientation orientation, int tlcBrc[2], int &slice)

Public Attributes
enum svk::svkOverlayView:: { ... }	ColorSchema
	Enum represents color schema, used for printing. More...

Protected Member Functions
void	SetupMrInput (bool firstInput)

void	SetupMsInput (bool firstInput)

void	UpdateImageSlice (bool centerImage)

void	SetSelection (double *selectionArea, bool isWorldCords=0)

void	SetOverlayOpacity (double opacity)

double	GetOverlayOpacity ()

void	SetOverlayThreshold (double threshold)

double	GetOverlayThreshold ()

void	SetTlcBrc (int *tlcBrc)

int *	HighlightSelectionVoxels ()

void	GenerateClippingPlanes ()

void	SetupOverlay ()

void	SetInterpolationType (int interpolationType)

void	UpdateSincInterpolation ()

void	SetLUT (svkLookupTable::svkLookupTableType type)

void	ResetWindowLevel ()
	Resets the window level, source taken from vtkImageViewer2. More...

int	FindCenterImageSlice (int spectraSlice, svkDcmHeader::Orientation orientation)

int	FindSpectraSlice (int imageSlice, svkDcmHeader::Orientation orientation)

int	FindOverlaySlice (int slice, svkDcmHeader::Orientation orientation)

bool	IsSatBandForSliceOn (svkDcmHeader::Orientation orientation)

bool	IsSatBandOutlineForSliceOn (svkDcmHeader::Orientation orientation)

bool	AreAllSatBandsOn (svkDcmHeader::Orientation orientation)

bool	AreAllSatBandOutlinesOn (svkDcmHeader::Orientation orientation)

Protected Member Functions inherited from svkDataView
virtual void	UpdateProps ()

void	ObserveData (svkImageData *data)

Protected Attributes
svkImageViewer2 *	imageViewer
	the vtkImageViewer2 object used to display the image More...

vtkRenderWindow *	myRenderWindow
	the render window in which the view is to be displayed More...

bool	toggleSelBoxVisibility

bool	imageInsideSpectra

svkImageMapToColors *	windowLevelerAxial
	Object used to window livel the overlay. More...

svkImageMapToColors *	windowLevelerCoronal

svkImageMapToColors *	windowLevelerSagittal

svkSincInterpolationFilter *	sincInterpolation

svkMriImageData *	interpOverlay

svkLookupTable *	colorTransfer

Protected Attributes inherited from svkDataView
vector< vtkRenderer * >	renCollection

vector< vtkProp * >	propCollection

vtkRenderWindowInteractor *	rwi

vector< svkImageData * >	dataVector

svkDataViewController *	controller

vtkCallbackCommand *	dataModifiedCallback

svkDcmHeader::Orientation	orientation

int	tlcBrc [2]
	the top left, bottom right corners of the current view More...

int	slice

vector< bool >	isPropOn

vector< bool >	isRendererOn

vector< bool >	isPropVisible

bool	isValidationOn

Friends
class	svkOverlayViewController

Additional Inherited Members
Static Protected Member Functions inherited from svkDataView
static void	UpdateView (vtkObject subject, unsigned long eid, void thisObject, void *callData)

Detailed Description

An implementation of DataView, this class is designed to create a visualization of the spectroscopy spatial information overlayed on the anatomical image. It uses a vtkImageViewer2 to present the anatamical data then the spectroscopy data is added.

TODO: Find a better (more condensed) way to deal with satband and overlay actors

Member Enumeration Documentation

anonymous enum

Enum represents color schema, used for printing.

Enumerator
LIGHT_ON_DARK
DARK_ON_LIGHT

enum DataInputs

Enum represents input indecies.

Enumerator
MRI
MR4D
OVERLAY

enum InterpolationType

Enum represents interpolation methods for the overlay.

Enumerator
NEAREST
LINEAR
SINC

enum PropType

Enum represents objects in the scene.

Enumerator
VOL_SELECTION
SAT_BANDS_AXIAL
SAT_BANDS_AXIAL_OUTLINE
SAT_BANDS_CORONAL
SAT_BANDS_SAGITTAL
SAT_BANDS_CORONAL_OUTLINE
SAT_BANDS_SAGITTAL_OUTLINE
PLOT_GRID
AXIAL_OVERLAY_FRONT
AXIAL_OVERLAY_BACK
CORONAL_OVERLAY_FRONT
CORONAL_OVERLAY_BACK
SAGITTAL_OVERLAY_FRONT
SAGITTAL_OVERLAY_BACK
COORDINATES
COLOR_BAR
LAST_PROP

enum RendererType

Enum represents renderers in the window.

Enumerator
PRIMARY
MOUSE_LOCATION
LAST_RENDERER

Constructor & Destructor Documentation

svkOverlayView ( )

Constructor creates the vtkImageView2, and sets its size.

References svkDcmHeader::AXIAL, svkOverlayView::AXIAL_OVERLAY_BACK, svkOverlayView::AXIAL_OVERLAY_FRONT, svkOverlayView::COLOR_BAR, svkOverlayView::colorTransfer, svkDcmHeader::CORONAL, svkOverlayView::CORONAL_OVERLAY_BACK, svkOverlayView::CORONAL_OVERLAY_FRONT, svkDataView::dataVector, svkSatBandSet::GetSatBandsActor(), svkSatBandSet::GetSatBandsOutlineActor(), svkOverlayView::imageInsideSpectra, svkOverlayView::imageViewer, svkOverlayView::interpOverlay, svkDataView::isPropOn, svkDataView::isPropVisible, svkDataView::isRendererOn, svkOverlayView::LAST_PROP, svkOverlayView::LAST_RENDERER, svkOverlayView::myRenderWindow, svkOverlayView::NEAREST, svkMriImageData::New(), svkImageViewer2::New(), svkSatBandSet::New(), svkImageActor::New(), svkSincInterpolationFilter::New(), svkOverlayView::PLOT_GRID, svkDataView::propCollection, svkDataView::renCollection, svkDataView::rwi, svkDcmHeader::SAGITTAL, svkOverlayView::SAGITTAL_OVERLAY_BACK, svkOverlayView::SAGITTAL_OVERLAY_FRONT, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, svkOverlayView::SAT_BANDS_SAGITTAL, svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE, svkSatBandSet::SetOrientation(), svkDataView::SetProp(), svkOverlayView::sincInterpolation, svkDataView::slice, svkDataView::tlcBrc, svkOverlayView::toggleSelBoxVisibility, svkDataView::TurnPropOff(), svkOverlayView::VOL_SELECTION, svkOverlayView::windowLevelerAxial, svkOverlayView::windowLevelerCoronal, and svkOverlayView::windowLevelerSagittal.

~svkOverlayView ( )

Destructor deletes the vtkImageViewer2.

References svkOverlayView::colorTransfer, svkOverlayView::imageViewer, svkOverlayView::interpOverlay, svkDataView::rwi, svkOverlayView::sincInterpolation, svkOverlayView::windowLevelerAxial, svkOverlayView::windowLevelerCoronal, and svkOverlayView::windowLevelerSagittal.

Member Function Documentation

void AlignCamera ( )

References svkOverlayView::GenerateClippingPlanes(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkOverlayView::imageViewer, svkOverlayView::PLOT_GRID, svkOverlayView::PRIMARY, svkImageViewer2::ResetCamera(), svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, svkOverlayView::SAT_BANDS_SAGITTAL, and svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE.

Referenced by svkOverlayView::SetupMrInput().

bool AreAllSatBandOutlinesOn ( svkDcmHeader::Orientation orientation )

protected

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::IsPropOn(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, and svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE.

Referenced by svkOverlayView::SetOrientation().

bool AreAllSatBandsOn ( svkDcmHeader::Orientation orientation )

protected

Are all the sat bands on? If any bands other than the slice is on, we'll say yes

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::IsPropOn(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_CORONAL, and svkOverlayView::SAT_BANDS_SAGITTAL.

Referenced by svkOverlayView::SetOrientation().

bool AreOrthogonalImagesOn ( )

References svkImageViewer2::AreOrthogonalImagesOn(), and svkOverlayView::imageViewer.

bool CheckDataOrientations ( )

References svkDataValidator::AreDataCompatible(), svkDataView::dataVector, svkImageData::GetDcos(), svkDataValidator::INVALID_DATA_ORIENTATION, svkDataValidator::IsInvalid(), and svkDataValidator::New().

int FindCenterImageSlice	(	int	spectraSlice,
		svkDcmHeader::Orientation	orientation
	)

protected

Finds the image slice that most closely corresponds to the input spectra slice.

References svkDataView::dataVector, svkOverlayView::MR4D, and svkOverlayView::MRI.

Referenced by svkOverlayView::UpdateImageSlice().

int FindOverlaySlice	(	int	slice,
		svkDcmHeader::Orientation	orientation
	)

protected

References svkDataView::dataVector, svkOverlayView::MR4D, svkOverlayView::MRI, and svkOverlayView::OVERLAY.

int FindSpectraSlice	(	int	imageSlice,
		svkDcmHeader::Orientation	orientation
	)

protected

References svkDataView::dataVector, svkOverlayView::MR4D, and svkOverlayView::MRI.

Referenced by svkOverlayView::SetSlice().

void GenerateClippingPlanes ( )

protected

Generates the clipping planes for the mMMapper. This is how the boundries set are enforced, after the data is scaled, it is clipped so that data outside the plot range is simply not shown.

References svkDataView::ClipMapperToTlcBrc(), svkDataView::dataVector, svkDataView::GetProp(), svkOverlayView::MR4D, svkOverlayView::PLOT_GRID, and svkDataView::tlcBrc.

Referenced by svkOverlayView::AlignCamera(), svkOverlayView::SetSlice(), and svkOverlayView::SetTlcBrc().

double GetColorOverlayLevel ( )

References svkOverlayView::colorTransfer.

double GetColorOverlayWindow ( )

References svkOverlayView::colorTransfer.

string GetDataCompatibility	(	svkImageData *	data,
		int	targetIndex
	)

Check to make sure a given dataset is comptabile with the currently loaded data sets.

Parameters

data	the prospective data.
targetIndex	the index in which the data is trying to be placed.

Returns: resultInfo returns an empty string if the dataset is compatibly, otherwise an explaination of why the dataset is not compatible is returned.

References svkDataValidator::AreDataCompatible(), svkDataView::dataVector, svkDataValidator::INVALID_DATA_ORIENTATION, svkDataValidator::IsInvalid(), svkDataValidator::IsOnlyError(), svkDataView::isValidationOn, svkOverlayView::MR4D, svkOverlayView::MRI, svkDataValidator::New(), svkOverlayView::OVERLAY, and svkDataValidator::resultInfo.

Referenced by svkOverlayView::SetInputPostReslice().

double GetLevel ( )

References svkOverlayView::imageViewer.

svkLookupTable * GetLookupTable ( )

Sets the LUT type

Parameters

LUT type

References svkOverlayView::colorTransfer.

double GetOverlayOpacity ( )

protected

Gets the opacity of the image overlay.

double GetOverlayThreshold ( )

protected

Gets the opacity of the image overlay.

double GetWindow ( )

References svkOverlayView::imageViewer.

int * HighlightSelectionVoxels ( )

protected

Method highlights voxels within the selection box

Returns: tlcBrc the cell id's of the desired top left, bottom right corners

References svkDataView::dataVector, svkOverlayView::MR4D, svkDataView::orientation, svkOverlayView::SetTlcBrc(), svkDataView::slice, and svkDataView::tlcBrc.

Referenced by svkOverlayView::SetupMsInput().

bool IsImageInsideSpectra ( )

Returns true if the current image is within the spectrscopy data set

References svkOverlayView::imageInsideSpectra.

bool IsSatBandForSliceOn ( svkDcmHeader::Orientation orientation )

protected

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::IsPropOn(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_CORONAL, and svkOverlayView::SAT_BANDS_SAGITTAL.

Referenced by svkOverlayView::SetOrientation().

bool IsSatBandOutlineForSliceOn ( svkDcmHeader::Orientation orientation )

protected

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::IsPropOn(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, and svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE.

Referenced by svkOverlayView::SetOrientation().

static svkOverlayView* New ( )

static

Referenced by svkOverlayViewController::Reset(), and svkOverlayViewController::svkOverlayViewController().

void RemoveInput ( int index )

virtual

Removes a data input and the associated actors. Currently only implemented for overlay.

Reimplemented from svkDataView.

References svkOverlayView::OVERLAY, and svkOverlayView::SetupOverlay().

void ResetWindowLevel ( )

protected

Resets the window level, source taken from vtkImageViewer2.

References svkDataView::dataVector, svkImageViewer2::GetImageActor(), svkDataView::GetRenderer(), svkOverlayView::imageViewer, svkOverlayView::MRI, svkOverlayView::PRIMARY, svkImageViewer2::Render(), svkImageViewer2::SetColorLevel(), svkImageViewer2::SetColorWindow(), and svkImageViewer2::UpdateInputInformation().

Referenced by svkOverlayViewController::ResetWindowLevel(), and svkOverlayView::SetupMrInput().

void SetActiveImageVolume ( int volume )

virtual

Sets the active volume. The active volume will be the rendered volume.

Parameters

volume

References svkOverlayView::imageViewer, and svkImageViewer2::SetActiveVolume().

void SetActiveOverlayVolume ( int volume )

virtual

Sets the active overlay volume.

Parameters

volume

References svkDataView::dataVector, svkDataView::GetRenderer(), svkOverlayView::OVERLAY, svkOverlayView::PRIMARY, svkDataView::Refresh(), svkOverlayView::windowLevelerAxial, svkOverlayView::windowLevelerCoronal, and svkOverlayView::windowLevelerSagittal.

void SetCameraZoom ( double zoom )

Set the camera zoom factor

References svkOverlayView::imageViewer, svkImageViewer2::ResetCamera(), and svkImageViewer2::SetCameraZoom().

void SetColorOverlayLevel ( double level )

References svkOverlayView::colorTransfer, and svkDataView::Refresh().

void SetColorOverlayWindow ( double window )

References svkOverlayView::colorTransfer, and svkDataView::Refresh().

void SetInput	(	svkImageData *	data,
		int	index = `0`
	)

virtual

Sets the data object in the object, also sets the input to the vtkImageViewer2 and renders it. Reslices any images necesary

Parameters

data	the data you want to view
index	the index of the data you want to set

Implements svkDataView.

References svkDataView::dataVector, svkOverlayView::MR4D, svkOverlayView::MRI, svkOverlayView::OVERLAY, and svkOverlayView::SetInputPostReslice().

Referenced by svkOverlayView::SetInterpolationType(), and svkOverlayView::UpdateSincInterpolation().

void SetInputPostReslice	(	svkImageData *	data,
		int	index
	)

virtual

Sets the input without reslicing.

References svkDataView::dataVector, svkOverlayView::GetDataCompatibility(), svkDataView::ObserveData(), svkOverlayView::OVERLAY, svkDataView::Refresh(), svkOverlayView::SetupMrInput(), svkOverlayView::SetupMsInput(), and svkOverlayView::SetupOverlay().

Referenced by svkOverlayView::SetInput().

void SetInterpolationType ( int interpolationType )

protected

Sets the type of interpolation for the overlayed image.

Parameters

interpolationType options are NEAREST, LINEAR, or SINC

References svkOverlayView::AXIAL_OVERLAY_BACK, svkOverlayView::AXIAL_OVERLAY_FRONT, svkOverlayView::CORONAL_OVERLAY_BACK, svkOverlayView::CORONAL_OVERLAY_FRONT, svkDataView::dataVector, svkDataView::GetProp(), svkOverlayView::interpOverlay, svkOverlayView::LINEAR, svkOverlayView::NEAREST, svkOverlayView::OVERLAY, svkDataView::Refresh(), svkOverlayView::SAGITTAL_OVERLAY_BACK, svkOverlayView::SAGITTAL_OVERLAY_FRONT, svkOverlayView::SetInput(), svkOverlayView::SINC, svkOverlayView::sincInterpolation, and svkOverlayView::UpdateSincInterpolation().

Referenced by svkOverlayView::SetupOverlay().

void SetLevel ( double level )

References svkImageViewer2::GetImageActor(), svkOverlayView::imageViewer, svkImageViewer2::Render(), and svkImageViewer2::SetColorLevel().

void SetLUT ( svkLookupTable::svkLookupTableType type )

protected

Sets the LUT type

Parameters

LUT type

References svkOverlayView::AXIAL_OVERLAY_FRONT, svkOverlayView::COLOR_BAR, svkOverlayView::colorTransfer, svkDataView::dataVector, svkLookupTable::GetAlphaThreshold(), svkDataView::GetProp(), svkLookupTable::New(), svkOverlayView::OVERLAY, svkDataView::Refresh(), svkLookupTable::SetAlphaThreshold(), svkLookupTable::SetLUTType(), svkOverlayView::windowLevelerAxial, svkOverlayView::windowLevelerCoronal, and svkOverlayView::windowLevelerSagittal.

Referenced by svkOverlayView::SetupOverlay().

void SetOrientation ( svkDcmHeader::Orientation orientation )

virtual

Reimplemented from svkDataView.

References svkOverlayView::AreAllSatBandOutlinesOn(), svkOverlayView::AreAllSatBandsOn(), svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::dataVector, svkImageViewer2::GetImageActor(), svkDataView::GetRenderer(), svkImageViewer2::GetSlice(), svkOverlayView::imageViewer, svkOverlayView::IsSatBandForSliceOn(), svkOverlayView::IsSatBandOutlineForSliceOn(), svkOverlayView::MR4D, svkOverlayView::MRI, svkDataView::orientation, svkOverlayView::PRIMARY, svkDataView::Refresh(), svkDataView::ResetTlcBrcForNewOrientation(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, svkOverlayView::SAT_BANDS_SAGITTAL, svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE, svkImageViewer2::SetOrientation(), svkOverlayView::SetSlice(), svkDataView::tlcBrc, svkDataView::TurnPropOff(), and svkDataView::TurnPropOn().

void SetOverlayOpacity ( double opacity )

protected

Sets the opacity of the image overlay.

Parameters

opacity the new opacity you wish the image overlay to have.

References svkOverlayView::AXIAL_OVERLAY_BACK, svkOverlayView::AXIAL_OVERLAY_FRONT, svkOverlayView::CORONAL_OVERLAY_BACK, svkOverlayView::CORONAL_OVERLAY_FRONT, svkDataView::GetProp(), svkOverlayView::SAGITTAL_OVERLAY_BACK, and svkOverlayView::SAGITTAL_OVERLAY_FRONT.

Referenced by svkOverlayView::SetupOverlay().

void SetOverlayThreshold ( double threshold )

protected

Sets the threshold of the image overlay.

Parameters

threshold the new threshold you wish the image overlay to have.

References svkOverlayView::AXIAL_OVERLAY_FRONT, svkOverlayView::colorTransfer, svkDataView::GetProp(), and svkLookupTable::SetAlphaThreshold().

void SetRWInteractor ( vtkRenderWindowInteractor * rwi )

virtual

Sets the vtkRenderWindowInteractor to be associated with this view.

Parameters

rwi	the vtkRenderWindowInteractor you wish this view to use

Reimplemented from svkDataView.

References svkDataView::GetRenderer(), svkOverlayView::myRenderWindow, svkOverlayView::PRIMARY, svkDataView::rwi, and svkDataView::TurnRendererOn().

void SetSelection	(	double *	selectionArea,
		bool	isWorldCords = `0`
	)

protected

Sets desired the current selection in Display (pixels) coordinates and highlights the intersected voxels.

Parameters

selectionArea the area you wish to select voxels within [xmin, xmax, ymin, ymax]

References svkDataView::dataVector, svkDataView::GetRenderer(), svkVoxelTaggingUtils::IsImageVoxelTagData(), svkOverlayView::MR4D, svkDataView::orientation, svkOverlayView::OVERLAY, svkOverlayView::PRIMARY, svkDataView::rwi, svkOverlayView::SetTlcBrc(), svkDataView::slice, and svkVoxelTaggingUtils::ToggleVoxelTag().

void SetSlice ( int slice )

virtual

Sets the current slice.

Parameters

slice the slice you want to view

Implements svkDataView.

Referenced by svkOverlayView::SetOrientation(), svkOverlayView::SetSlice(), svkOverlayView::SetupMrInput(), and svkOverlayView::SetupMsInput().

void SetSlice	(	int	slice,
		bool	centerImage
	)

virtual

Sets the current slice and centers the image to the voxel.

Parameters

slice the slice you want to view

References svkDataView::dataVector, svkOverlayView::GenerateClippingPlanes(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkOverlayView::imageViewer, svkDataView::isPropOn, svkOverlayView::MR4D, svkOverlayView::MRI, svkDataView::orientation, svkOverlayView::PRIMARY, svkDataView::Refresh(), svkImageViewer2::SetSlice(), svkDataView::slice, svkDataView::tlcBrc, svkOverlayView::toggleSelBoxVisibility, svkOverlayView::UpdateImageSlice(), and svkOverlayView::VOL_SELECTION.

void SetSlice	(	int	slice,
		svkDcmHeader::Orientation	orientation
	)

virtual

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::dataVector, svkOverlayView::FindSpectraSlice(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkOverlayView::imageInsideSpectra, svkOverlayView::imageViewer, svkDataView::isPropOn, svkOverlayView::MR4D, svkOverlayView::PLOT_GRID, svkOverlayView::PRIMARY, svkDataView::Refresh(), svkDcmHeader::SAGITTAL, svkSatBandSet::SetClipSlice(), svkImageViewer2::SetSlice(), svkOverlayView::SetSlice(), svkOverlayView::toggleSelBoxVisibility, and svkOverlayView::VOL_SELECTION.

void SetTlcBrc ( int * tlcBrc )

protected

Used to select Actors based on their Top Left and Bottom Right Corners

Parameters

tlcBrc the cell id's of the desired top left, bottom right corners

References svkDataView::dataVector, svkOverlayView::GenerateClippingPlanes(), svkDataView::IsTlcBrcWithinData(), and svkOverlayView::MR4D.

Referenced by svkOverlayView::HighlightSelectionVoxels(), and svkOverlayView::SetSelection().

void SetupMrInput ( bool resetViewState )

protected

Sets the input of the vtkImageViewer2. It also resets the camera view and the slice. This should be modified once the new image loader is written.

Parameters

resetViewState boolean identifies of this is the first dataset input

References svkOverlayView::AlignCamera(), svkDataView::dataVector, svkImageViewer2::GetImageActor(), svkDataView::GetRenderer(), svkOverlayView::imageViewer, svkOverlayView::MR4D, svkOverlayView::MRI, svkOverlayView::myRenderWindow, svkOverlayView::PRIMARY, svkOverlayView::ResetWindowLevel(), svkDataView::rwi, svkImageViewer2::SetInputData(), svkSatBandSet::SetReferenceImage(), svkImageViewer2::SetSlice(), svkOverlayView::SetSlice(), and svkDataView::slice.

Referenced by svkOverlayView::SetInputPostReslice().

void SetupMsInput ( bool resetViewState )

protected

Sets the input of the vtkImageViewer2. It also resets the camera view and the slice.

Parameters

resetViewState boolean identifies of this is the first dataset input

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::dataVector, svkDataView::GetProp(), svkDataView::GetRenderer(), svkImageViewer2::GetSlice(), svkMrsTopoGenerator::GetTopoActorCollection(), svkOverlayView::HighlightSelectionVoxels(), svkOverlayView::imageViewer, svkOverlayView::MR4D, svkOverlayView::MRI, svkMrsTopoGenerator::New(), svkOverlayView::PLOT_GRID, svkOverlayView::PRIMARY, svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, svkOverlayView::SAT_BANDS_SAGITTAL, svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE, svkSatBandSet::SetInput(), svkDataView::SetProp(), svkOverlayView::SetSlice(), svkDataView::slice, svkDataView::TurnPropOff(), svkDataView::TurnPropOn(), svk4DImageData::VOL_SELECTION, and svkOverlayView::VOL_SELECTION.

Referenced by svkOverlayView::SetInputPostReslice().

void SetupOverlay ( )

protected

Sets up the overlay actor.

References svkOverlayView::AXIAL_OVERLAY_BACK, svkOverlayView::AXIAL_OVERLAY_FRONT, svkLookupTable::COLOR, svkOverlayView::COLOR_BAR, svkOverlayView::colorTransfer, svkOverlayView::CORONAL_OVERLAY_BACK, svkOverlayView::CORONAL_OVERLAY_FRONT, svkDataView::dataVector, svkLookupTable::GetLUTType(), svkDataView::GetProp(), svkDataView::GetRenderer(), svkOverlayView::MRI, svkImageMapToColors::New(), svkImageActor::New(), svkLookupTable::NONE, svkOverlayView::OVERLAY, svkOverlayView::PRIMARY, svkDataView::Refresh(), svkOverlayView::SAGITTAL_OVERLAY_BACK, svkOverlayView::SAGITTAL_OVERLAY_FRONT, svkOverlayView::SetInterpolationType(), svkOverlayView::SetLUT(), svkOverlayView::SetOverlayOpacity(), svkDataView::SetProp(), svkImageData::SLICE, svkDataView::TurnPropOff(), svkDataView::TurnPropOn(), svkOverlayView::windowLevelerAxial, svkOverlayView::windowLevelerCoronal, and svkOverlayView::windowLevelerSagittal.

Referenced by svkOverlayView::RemoveInput(), and svkOverlayView::SetInputPostReslice().

void SetWindow ( double window )

References svkImageViewer2::GetImageActor(), svkOverlayView::imageViewer, svkImageViewer2::Render(), and svkImageViewer2::SetColorWindow().

void ToggleSelBoxVisibilityOff ( )

References svkDataView::GetProp(), svkOverlayView::toggleSelBoxVisibility, svkDataView::TurnPropOn(), and svkOverlayView::VOL_SELECTION.

void ToggleSelBoxVisibilityOn ( )

References svkDataView::dataVector, svkDataView::GetProp(), svkOverlayView::MR4D, svkDataView::orientation, svkOverlayView::toggleSelBoxVisibility, svkDataView::TurnPropOn(), and svkOverlayView::VOL_SELECTION.

void TurnOrthogonalImagesOff ( )

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::GetOrientation(), svkOverlayView::imageViewer, svkDataView::IsPropOn(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, svkOverlayView::SAT_BANDS_SAGITTAL, svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE, svkImageViewer2::TurnOrthogonalImagesOff(), svkDataView::TurnPropOff(), and svkDataView::TurnPropOn().

void TurnOrthogonalImagesOn ( )

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::GetOrientation(), svkOverlayView::imageViewer, svkDataView::IsPropOn(), svkDcmHeader::SAGITTAL, svkOverlayView::SAT_BANDS_AXIAL, svkOverlayView::SAT_BANDS_AXIAL_OUTLINE, svkOverlayView::SAT_BANDS_CORONAL, svkOverlayView::SAT_BANDS_CORONAL_OUTLINE, svkOverlayView::SAT_BANDS_SAGITTAL, svkOverlayView::SAT_BANDS_SAGITTAL_OUTLINE, svkImageViewer2::TurnOrthogonalImagesOn(), and svkDataView::TurnPropOn().

void UpdateImageSlice ( bool centerImage )

protected

Sets the slice of the anatomical data, based on the spectroscopic slice. It calculates the anatomical slice closest to the center of the spectroscopic slice.

References svkDcmHeader::AXIAL, svkDcmHeader::CORONAL, svkDataView::dataVector, svkOverlayView::FindCenterImageSlice(), svkImageViewer2::GetImageActor(), svkImageViewer2::GetSlice(), svkOverlayView::imageInsideSpectra, svkOverlayView::imageViewer, svkOverlayView::MRI, svkDataView::orientation, svkDcmHeader::SAGITTAL, svkSatBandSet::SetClipSlice(), svkSatBandSet::SetClipToReferenceImage(), svkImageViewer2::SetSlice(), and svkDataView::slice.