#include <svkGEPFileMapperMPCSIOBL.h>

Inheritance diagram for svkGEPFileMapperMPCSIOBL:

Public Member Functions
	vtkTypeMacro (svkGEPFileMapperMPCSIOBL, svkGEPFileMapper)

void	ReadData (vtkstd::string pFileName, vtkImageData *data)

Public Member Functions inherited from svkGEPFileMapper
	vtkTypeMacro (svkGEPFileMapper, vtkObject)

virtual void	InitializeDcmHeader (map< string, vector< string > > pfMap, svkDcmHeader header, float pfileVersion, int swapBytes, map< string, void > inputArgs)

virtual void	ReadData (vtkStringArray pFileNames, svkImageData data)

string	GetProgressText ()

void	SetProgressText (string progressText)

void	SetPfileName (string pfileName)

Static Public Member Functions
static svkGEPFileMapperMPCSIOBL *	New ()

Static Public Member Functions inherited from svkGEPFileMapper
static svkGEPFileMapper *	New ()

static string	ConvertGEDateToDICOM (string geDate)

Protected Member Functions
	svkGEPFileMapperMPCSIOBL ()

	~svkGEPFileMapperMPCSIOBL ()

virtual int	GetNumTimePoints ()

virtual void	GetNumVoxels (int numVoxels[3])

virtual int	GetNumDummyScans ()

Protected Member Functions inherited from svkGEPFileMapper
	svkGEPFileMapper ()

	~svkGEPFileMapper ()

void	InitPatientModule ()

void	InitGeneralStudyModule ()

void	InitGeneralSeriesModule ()

void	InitFrameOfReferenceModule ()

void	InitGeneralEquipmentModule ()

void	InitEnhancedGeneralEquipmentModule ()

virtual void	InitMultiFrameFunctionalGroupsModule ()

virtual void	InitAcquisitionContextModule ()

virtual void	InitMRSpectroscopyPulseSequenceModule ()

virtual void	InitSharedFunctionalGroupMacros ()

virtual void	InitPerFrameFunctionalGroupMacros ()

virtual void	InitPixelMeasuresMacro ()

virtual void	InitPlaneOrientationMacro ()

virtual void	InitMRSpectroscopyFrameTypeMacro ()

virtual void	InitMRTimingAndRelatedParametersMacro ()

virtual void	InitMRSpectroscopyFOVGeometryMacro ()

virtual void	InitMREchoMacro ()

virtual void	InitMRModifierMacro ()

virtual void	InitMRReceiveCoilMacro ()

virtual void	InitMRTransmitCoilMacro ()

virtual void	InitMRAveragesMacro ()

virtual void	InitMRSpatialSaturationMacro ()

virtual void	InitSatBand (float satRAS[3], float translation)

virtual void	InitMRSpectroscopyModule ()

virtual string	GetVolumeLocalizationTechnique ()

virtual void	InitVolumeLocalizationSeq ()

virtual void	InitMRSpectroscopyDataModule ()

virtual void	InitK0Sampled (svkDcmHeader *hdr)

virtual void	InitSatBandsFromXML ()

virtual void	GetCenterFromRawFile (double *center)

virtual float	GetFrequencyOffset ()

int	GetNumVoxelsInVol ()

virtual int	GetNumKSpacePoints ()

virtual void	GetVoxelSpacing (double voxelSpacing[3])

void	GetFOV (float fov[3])

int	GetNumCoils ()

int	GetNumFrames ()

virtual int	GetNumEPSIAcquisitions ()

bool	AddDummy (int offset, int coilNum, int timePt)

void	GetDcos (double dcos[3][3])

virtual float	GetPPMRef ()

bool	IsSwapOn ()

bool	Is2D ()

virtual bool	IsChopOn ()

virtual void	GetXYZIndices (int dataIndex, int x, int y, int *z)

void	UpdateProgress (double amount)

virtual void	ModifyBehavior (svkImageData *data)

void	RedimensionModifiedSVData (svkImageData *data)

virtual int	GetNumberUnsuppressedAcquisitions ()

virtual int	GetNumberSuppressedAcquisitions ()

virtual void	GetSelBoxCenter (double selBoxCenter[3])

virtual void	GetSelBoxSize (double selBoxSize[3])

void	SetCellSpectrum (vtkImageData *data, bool wasSampled, int offset, int index, int x, int y, int z, int timePoint=0, int channel=0)

virtual void	InitSpecTuple (int numFreqPts, int freqPt, float tuple, vtkDataArray dataArray)

int	GetHeaderValueAsInt (string key)

long long int	GetHeaderValueAsLongInt (string key)

float	GetHeaderValueAsFloat (string key)

string	GetHeaderValueAsString (string key)

virtual bool	WasIndexSampled (int xIndex, int yIndex, int zIndex)

bool	isInputArgSet (string argName)

bool	GetInputArgStringValue (string argName, string *argValue)

bool	GetInputArgBoolValue (string argName, bool *argValue)

virtual void	ReorderEPSI (svkMrsImageData *data)

string	GetNucleus ()

void	ModifyForPatientEntry (double dcos[3][3])

Additional Inherited Members
Public Types inherited from svkGEPFileMapper
enum	MapperBehavior { UNDEFINED = 0, LOAD_RAW, LOAD_RAW_UNSUPPRESSED, LOAD_RAW_SUPPRESSED, LOAD_AVG_UNSUPPRESSED, LOAD_AVG_SUPPRESSED, LOAD_EPSI }

Protected Attributes inherited from svkGEPFileMapper
string	progressText

map< string, vector< string > >	pfMap

svkDcmHeader *	dcmHeader

float	pfileVersion

int *	specData

svkDcmHeader::DcmDataOrderingDirection	dataSliceOrder

int	chopVal

map< string, void * >	inputArgs

int	swapBytes

svkMRSIOD *	iod

double	progress

string	pfileName

Detailed Description

Mapper from pfile header to DICOM IOD/SOP Class instance for NIH mpcsiobl multi-planar CSI psd.

Constructor & Destructor Documentation

svkGEPFileMapperMPCSIOBL ( )

protected

~svkGEPFileMapperMPCSIOBL ( )

protected

Member Function Documentation

int GetNumDummyScans ( )

protectedvirtual

just for testing

Reimplemented from svkGEPFileMapper.

int GetNumTimePoints ( )

protectedvirtual

Determine number of time points in the PFile. For mbrease, there are suppressed, unsuppressed acquisitions in the same data set. There is 1 dummy scan before each coil: coil 1: dummy + unsuppressed_scans + suppressed_scans coil 2: ""

Reimplemented from svkGEPFileMapper.

void GetNumVoxels ( int numVoxels[3] )

protectedvirtual

Get the 3D spatial dimensionality of the data set Returns an int array with 3 dimensions. Swaps if necessary based on freq_dir setting.

Reimplemented from svkGEPFileMapper.

References svkGEPFileMapper::IsSwapOn().

static svkGEPFileMapperMPCSIOBL* New ( )

static

void ReadData	(	vtkstd::string	pFileName,
		vtkImageData *	data
	)

vtkTypeMacro	(	svkGEPFileMapperMPCSIOBL	,
		svkGEPFileMapper
	)

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation