svkUCSFUtils.h

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/*
 *  Copyright © 2009-2014 The Regents of the University of California.
 *  All Rights Reserved.
 *
 *  Redistribution and use in source and binary forms, with or without 
 *  modification, are permitted provided that the following conditions are met:
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 *      this list of conditions and the following disclaimer.
 *  •   Redistributions in binary form must reproduce the above copyright notice, 
 *      this list of conditions and the following disclaimer in the documentation 
 *      and/or other materials provided with the distribution.
 *  •   None of the names of any campus of the University of California, the name 
 *      "The Regents of the University of California," or the names of any of its 
 *      contributors may be used to endorse or promote products derived from this 
 *      software without specific prior written permission.
 *  
 *  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
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 *  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. 
 *  IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, 
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/*
 *  $URL$
 *  $Rev$
 *  $Author$
 *  $Date$
 *
 *  Authors:
 *      Jason C. Crane, Ph.D.
 *      Beck Olson
 */


#ifndef SVK_UCSF_UTILS_H
#define SVK_UCSF_UTILS_H


#include <string>
#include <map>
#include <vector>
#include <vtkObjectFactory.h>
#include <vtkObject.h>
#include <svkDcmHeader.h>
#include <svkMriImageData.h>
#include <svkMrsImageData.h>



namespace svk {


using namespace std;
class svkUCSFUtils : public vtkObject
{

    public:

        static bool mapCreated;

        // vtk type revision macro
        vtkTypeMacro( svkUCSFUtils,vtkObject );
  
        // vtk initialization 
        static svkUCSFUtils* New();  

        static void           CreateMap();

        static string         GetMetaboliteName( string fileName );

        static string         GetMetaboliteDirectoryName( string spectraFileName );

        static string         GetMetaboliteRoot( string spectraFileName );

        static string         GetMetaboliteFileName( string spectraFileName, string metaboliteName, bool includePath=false );

        static string         GetMetabolitePostfix( string metaboliteName );

        static string         GetMetaboliteFromPostfix( string postfixName );

        static vector<string> GetAllMetaboliteNames();

        static string         GetDICOMFileName( string fileName, svkDcmHeader* header );

        static int            ReidentifyImages( string directory );

        static map<string, string> metaboliteMap;



    protected:

       svkUCSFUtils();
       ~svkUCSFUtils();
        
};


}   //svk



#endif //SVK_UCSF_UTILS