svkLCModelRawWriter.h

Go to the documentation of this file.

/*
 *  Copyright © 2009-2014 The Regents of the University of California.
 *  All Rights Reserved.
 *
 *  Redistribution and use in source and binary forms, with or without 
 *  modification, are permitted provided that the following conditions are met:
 *  •   Redistributions of source code must retain the above copyright notice, 
 *      this list of conditions and the following disclaimer.
 *  •   Redistributions in binary form must reproduce the above copyright notice, 
 *      this list of conditions and the following disclaimer in the documentation 
 *      and/or other materials provided with the distribution.
 *  •   None of the names of any campus of the University of California, the name 
 *      "The Regents of the University of California," or the names of any of its 
 *      contributors may be used to endorse or promote products derived from this 
 *      software without specific prior written permission.
 *  
 *  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
 *  ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
 *  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. 
 *  IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, 
 *  INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT 
 *  NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
 *  PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 
 *  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
 *  ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY 
 *  OF SUCH DAMAGE.
 */



/*
 *  $URL$
 *  $Rev$
 *  $Author$
 *  $Date$
 *
 *  Authors:
 *      Jason C. Crane, Ph.D.
 *      Beck Olson
 */


#ifndef SVK_LCMODEL_RAW_WRITER_H
#define SVK_LCMODEL_RAW_WRITER_H

#include <vtkInformation.h>

#include <svkImageWriter.h>
#include <svkImageData.h>



namespace svk {


class svkLCModelRawWriter : public svkImageWriter
{

    public:

        static svkLCModelRawWriter* New();
        vtkTypeMacro( svkLCModelRawWriter, svkImageWriter);

        //  Methods:
        vtkDataObject*  GetInput(int port);
        vtkDataObject*  GetInput() { return this->GetInput(0); };
        svkImageData*   GetImageDataInput(int port);
        void            SetBasisFileName( string fileName );
        void            UseSingleRawFile(bool useSingleRawFile); 
        virtual void    Write();


    protected:

        svkLCModelRawWriter();
        ~svkLCModelRawWriter();

        virtual int     FillInputPortInformation(int port, vtkInformation* info);
        virtual void    SetProvenance(); 


    private:
        void            InitImageData();
        void            WriteFiles();
        string          GetFileRootName(string fileRoot, svkDcmHeader::DimensionVector* dimensionVector, int frame); 
        string          basisFileName; 
        void            InitSpecData(
                            ofstream* out, 
                            svkDcmHeader::DimensionVector* dimensionVector, 
                            svkDcmHeader::DimensionVector* indexVector 
                        ); 
        void            InitQuantificationMask(); 
        void            InitRawHeader(ofstream* out, string fileName);
        void            InitControlHeader(ofstream* out, string fileRootName, string rawRoot, int cellID); 

        void            CreateGridTask( string controlFileName ); 
        void            WriteGridSubmissionFile( string fileRoot); 


        short*          quantificationMask;
        bool            singleRawFile;

        int             gridTaskIDCounter; 
        ofstream        submitScript;
        string          gridTasks; 
        string          gridQueue; 
        string          gridArch; 

};


}   //svk


#endif //SVK_LCMODEL_RAW_WRITER_H